PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02246.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 271aa    MW: 31099.9 Da    PI: 8.6703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02246.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.2e-50151392128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                               pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+  + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg
  Rsa1.0_02246.1_g00004.1  15 LPGFRFHPTDEELLGYYLRRKVENKPIKL-ELIKQIDIYKFNPWDLPRVSSVGQKEWYFFCMRGRKYKNSVRPNRVTGSGFWKATG 99 
                              69***************************.99***************77777999******************************* PP

                      NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               dk+v+s +   vglkk+Lv+y g+a kg+ktdW+mhe+rl
  Rsa1.0_02246.1_g00004.1 100 IDKPVYS-NFDCVGLKKSLVYYLGSAGKGSKTDWMMHEFRL 139
                              *******.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.78714163IPR003441NAC domain
SuperFamilySSF1019411.23E-5514162IPR003441NAC domain
PfamPF023652.3E-2516139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSGEGKDEEE DEAILPGFRF HPTDEELLGY YLRRKVENKP IKLELIKQID IYKFNPWDLP  60
RVSSVGQKEW YFFCMRGRKY KNSVRPNRVT GSGFWKATGI DKPVYSNFDC VGLKKSLVYY  120
LGSAGKGSKT DWMMHEFRLS STTKTDSRAQ QAEVWTLCRI FKRVTHKRNP TTIQPNRKPV  180
ITLTDSCSKS SSLDSDNTSH RVVDSLSHKL HETQTENPYW NQLTTVGFGQ PTYACNDNNF  240
LSFLNIDGGD FIGDSASWDE LRSVIDGNTK H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-521316316165NO APICAL MERISTEM PROTEIN
1ut4_B2e-521316316165NO APICAL MERISTEM PROTEIN
1ut7_A2e-521316316165NO APICAL MERISTEM PROTEIN
1ut7_B2e-521316316165NO APICAL MERISTEM PROTEIN
4dul_A2e-521316316165NAC domain-containing protein 19
4dul_B2e-521316316165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02246.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133561.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-167NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM4C7V40.0M4C7V4_BRARP; Uncharacterized protein
STRINGBra000282.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-155NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]