PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02197.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 292aa    MW: 32700.7 Da    PI: 8.8222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02197.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.43.2e-15206230226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ktelC+ +++tGtC+yGd C+FaHg
  Rsa1.0_02197.1_g00003.1 206 KTELCNKWQETGTCPYGDHCQFAHG 230
                              9***********************8 PP
2zf-CCCH21.44.5e-07243268126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykte Cr  +++ +C+yG rC+F H+
  Rsa1.0_02197.1_g00003.1 243 YKTEVCRMVLAGDICPYGHRCHFRHS 268
                              9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-18199237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-11201236IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9204231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23204232IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-12206230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-12238271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-9238273IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272242270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MENNSADGVV VARSRDQLYY STRNLMQQRR QDMVNREALC CTRLHEATLE AEALRAENTE  60
LRSLNLLLKK EIDQLIRSSL RNRYNRAPLR TLGGNNENQS PPAAAAGDRN RRGDDDVSDE  120
SPTNEDVNRS SLPKSISVRS SGYSKASVGG GGGGFVVQSR GAIPKPGTCA QQRITTTRKV  180
YVRGGKKEED EEEEIEVEVY NQGMTKTELC NKWQETGTCP YGDHCQFAHG IKELRPVIRH  240
PRYKTEVCRM VLAGDICPYG HRCHFRHSLS DQEKLMSAAC KPNNKSSSKL VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22206268567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02197.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-133AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444398.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-124C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A397YQ201e-136A0A397YQ20_BRACM; Uncharacterized protein
STRINGBra004288.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-98C3H family protein