PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02180.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 47168.6 Da PI: 8.078 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ Rsa1.0_02180.1_g00003.1 48 DEADCIYYLRTGACGYGSRCRFNHPR 73 6799********************96 PP | |||||||
2 | zf-CCCH | 30.3 | 7.4e-10 | 99 | 118 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f+rtGtCk+G++Ck++H++ Rsa1.0_02180.1_g00003.1 99 HFMRTGTCKFGATCKYHHPR 118 8*****************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.7e-12 | 139 | 163 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G +C+F+H+ Rsa1.0_02180.1_g00003.1 139 GEKECSYYLRTGQCKFGLTCRFNHP 163 7899********************9 PP | |||||||
4 | zf-CCCH | 40 | 6.7e-13 | 290 | 314 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ Rsa1.0_02180.1_g00003.1 290 DQPECQYFMRTGDCKFGSSCRYHHP 314 689*********************9 PP | |||||||
5 | zf-CCCH | 32.7 | 1.3e-10 | 336 | 361 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +fa+ G+Ck+G+ CkF H++ Rsa1.0_02180.1_g00003.1 336 GVAQCTHFAQHGICKFGPACKFDHSM 361 6788********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.5E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.38 | 95 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.69 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 99 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 143 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 290 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 291 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 294 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 334 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 337 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 340 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MERYGRSGEE GSRSDPSLEW TTTTHGGQTG VQASMWRGGV ESYPERPDEA DCIYYLRTGA 60 CGYGSRCRFN HPRDRGAVIG GGVRGGGDGA LPERMGQPHF MRTGTCKFGA TCKYHHPRQG 120 GGSVAPVTLS YLGYPLRPGE KECSYYLRTG QCKFGLTCRF NHPVPQQQQQ QPQPQPQLHT 180 IYPTLQSQPS QQYGLVLARP SLLPGSYLPS PYGPPMVLPP GMVTYPGWSP YQASLTAMPS 240 PGTQPSIGPS SVYGMAPLSP SGTAYTGGTY QPGGTSLTTS KEESFPQRPD QPECQYFMRT 300 GDCKFGSSCR YHHPLDAVQP KTGVLFSSIG LPLRPGVAQC THFAQHGICK FGPACKFDHS 360 MSSSLSYSPS ASSLTDMPVA PYPIGSSSLS GASAPVSSSD VPTTTQAVAA AASAPMVSGL 420 SSQEPAETSG DSASVSGSVE AKTSSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02180.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129667.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A3P5YZB7 | 0.0 | A0A3P5YZB7_BRACM; Uncharacterized protein | ||||
STRING | Bra020750.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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