PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02028.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 349aa    MW: 37648.4 Da    PI: 7.5723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02028.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-0994117125
                              --S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                              +kt+lC+ f++ GtC+y  +C+FaH
  Rsa1.0_02028.1_g00005.1  94 FKTKLCCKFRA-GTCPYVTNCNFAH 117
                              69*********.************* PP
2zf-CCCH17.95.7e-06166189326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               + C+ ++    C+yG++C+F+H+
  Rsa1.0_02028.1_g00005.1 166 GRHCKKYYTEEGCPYGESCTFMHD 189
                              5669*****9*************7 PP
3zf-CCCH42.79e-14224249126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  tG+C++G++C+FaHg
  Rsa1.0_02028.1_g00005.1 224 WKTRICNKWEITGYCPFGAKCHFAHG 249
                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.81E-891124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1391126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67193120IPR000571Zinc finger, CCCH-type
SMARTSM003560.003993119IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-794117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-8162190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009163191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7163190IPR000571Zinc finger, CCCH-type
SMARTSM003560.66163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-17217253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-10219254IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178223251IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-11224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSHHHHRRDS GGDVVHVIPT TNNPPPENWF PNLGDTSVWA TEDDYNRVSA SNPDGDNNNN  60
NGPPPNKKTR GSPSPSSSSA AASNRTKAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHTVE  120
ELRRPPPNWQ EIVAAHEEEG SPSREEFQIP SLVSTGEESG RSSFKGRHCK KYYTEEGCPY  180
GESCTFMHDE ASRNRESVAI SLGPGGGYGG GGGSGIQIVK PSNWKTRICN KWEITGYCPF  240
GAKCHFAHGA AELHRFGGGP VEGEGKDGVS PNSEVKQTGP NPKGDSDTTT TTLLSPGVPH  300
NSDAGYHSGV ALQRASSAVT QKPGIRTHQK WKGPGKISLI YGDWVDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02028.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485969.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A397ZAS60.0A0A397ZAS6_BRACM; Uncharacterized protein
TrEMBLM4D1060.0M4D106_BRARP; Uncharacterized protein
STRINGBra010155.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-167C3H family protein