PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01979.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 353aa    MW: 41939.9 Da    PI: 6.52
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01979.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.21.3e-13151358128
                      NAM   8 hPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                              +P+de ++++yL+  ++++k   +++   +e+++y+++Pw+     + ++ + + F+k+++  + gk    +  +g W+   +dk+
  Rsa1.0_01979.1_g00001.1  15 EPEDEIIISYYLNMMINNRKSWPDHFlrDEEANVYNLNPWRSF---N-TNPNNFIFVKSRTD-SCGKTDGSV--TGCWRIMARDKP 93 
                              7****************9994443441145669*******974...2.34567778776654.456655555..68********** PP

                      NAM  92 vlsk.kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                              ++s+ +g+  g kk+L f +++++++e    +  Wvm+eyrl
  Rsa1.0_01979.1_g00001.1  94 IKSEeTGRILGFKKILKFCENDKKRPEeeegEIIWVMEEYRL 135
                              **9877888**********765544442223566******98 PP
2NAM423e-131903259128
                      NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                              P  +e++++yLk  v++++   ++++++ ++y + Pw +  +  +  + +k  yfF++r++++    r+    + g W+   +d+ 
  Rsa1.0_01979.1_g00001.1 190 PPTDEIISYYLKMCVDARNDWPSHFLQSEQVYGAVPWMIVdAdqSSVELHKGRYFFVNREESS---GRTDHGCDGGCWRIMRRDRV 272
                              66679***********999666588**************63232222234578*****99865...58999899************ PP

                      NAM  92 vlsk.kgelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                              + sk ++e+ g k+ + f                ++ + +  k +Wvm+eyrl
  Rsa1.0_01979.1_g00001.1 273 ISSKrNKEVLGFKRLFKFCvkegeaepvykfwgdEKYEVNEFKVTWVMDEYRL 325
                              **99677889*********98888777777766556666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.3518151IPR003441NAC domain
PfamPF023657.9E-1015135IPR003441NAC domain
SuperFamilySSF1019411.96E-2016149IPR003441NAC domain
PROSITE profilePS5100521.271182341IPR003441NAC domain
PfamPF023652.8E-9189325IPR003441NAC domain
SuperFamilySSF1019413.01E-20190339IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEDHSKISQE DDQIEPEDEI IISYYLNMMI NNRKSWPDHF LRDEEANVYN LNPWRSFNTN  60
PNNFIFVKSR TDSCGKTDGS VTGCWRIMAR DKPIKSEETG RILGFKKILK FCENDKKRPE  120
EEEGEIIWVM EEYRLVDKWK QDQVICKIRA LLRYEVTSLL AKQFSFLSKW IIPLTRRDLL  180
PSFDLCVPNP PTDEIISYYL KMCVDARNDW PSHFLQSEQV YGAVPWMIVD ADQSSVELHK  240
GRYFFVNREE SSGRTDHGCD GGCWRIMRRD RVISSKRNKE VLGFKRLFKF CVKEGEAEPV  300
YKFWGDEKYE VNEFKVTWVM DEYRLAKKKE QGKVICRISL LFPSPLDSHF EYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01979.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455508.10.0PREDICTED: uncharacterized protein LOC108826619
TrEMBLA0A3P5XZD00.0A0A3P5XZD0_BRACM; Uncharacterized protein
STRINGBra029571.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.18e-67NAC domain containing protein 24