PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60350.1 | ||||||||
Common Name | anac024, NAC024, T13D8.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 37383.9 Da PI: 7.6187 | ||||||||
Description | NAC domain containing protein 24 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.6 | 5.2e-15 | 18 | 130 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 +d+ ++++yLk+ v + + +++i+++d+++ +P+ + + ++ f + + +++a gk ++g W+ g+dk+++s+ + + g kk+L AT1G60350.1 18 EDDAIISRYLKRMVVNGDSWPDHFIEDADVFNKNPNVE---F--DAESPSFVIVKPRTEACGKTDGC--ETGCWRIMGRDKPIKSTeTVKIQGFKKIL 108 6899*********99888666688***********643...2..33444566666676676655544..679************98445568****** PP NAM 107 vfykgrapkgektdWvmheyrl 128 f +r+p+g k +Wvm+eyrl AT1G60350.1 109 KFCLKRKPRGYKRSWVMEEYRL 130 ********************98 PP | |||||||
2 | NAM | 32.4 | 2.7e-10 | 209 | 303 | 37 | 128 |
NAM 37 vdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk......gektdWvmhe 125 ++y ++P +L ++ ++ + F+ ++t ++ r ++ gyWk +d+ ++sk+g ++g kk++ f++ ++++ +k +W+++e AT1G60350.1 209 NNVYCLHPLELV-DLQDrmfNDYGTCIFA-----NKTCGKTDRCINGGYWKILHRDRLIKSKSGIVIGFKKVFKFHETEKERyfcggeDVKVTWTLEE 300 578899999995.3322011222333443.....34556899**********************************765554222111469******* PP NAM 126 yrl 128 yrl AT1G60350.1 301 YRL 303 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.438 | 9 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-26 | 18 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-9 | 18 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-30 | 159 | 316 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.317 | 173 | 320 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-5 | 234 | 303 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEEDAAFDLL KAELLNAEDD AIISRYLKRM VVNGDSWPDH FIEDADVFNK NPNVEFDAES 60 PSFVIVKPRT EACGKTDGCE TGCWRIMGRD KPIKSTETVK IQGFKKILKF CLKRKPRGYK 120 RSWVMEEYRL TNNLNWKQDH VICKIRFMFE AEISFLLAKH FYTTSESLPR NELLPAYGFL 180 SSDKQLEDVS YPVTIMTSEG NDWPSYVTNN VYCLHPLELV DLQDRMFNDY GTCIFANKTC 240 GKTDRCINGG YWKILHRDRL IKSKSGIVIG FKKVFKFHET EKERYFCGGE DVKVTWTLEE 300 YRLSVKQNKF LCVIKFTYDN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18406710 | 0.0 | ||||
Genevisible | 264275_at | 1e-171 | ||||
Expression Atlas | AT1G60350 | - | ||||
AtGenExpress | AT1G60350 | - | ||||
ATTED-II | AT1G60350 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176238.1 | 0.0 | NAC domain containing protein 24 | ||||
TrEMBL | O80756 | 0.0 | O80756_ARATH; NAC domain containing protein 24 | ||||
STRING | AT1G60350.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60350.1 |
Entrez Gene | 842330 |
iHOP | AT1G60350 |
wikigenes | AT1G60350 |
Publications ? help Back to Top | |||
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