PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01905.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 284aa    MW: 33155.5 Da    PI: 5.8966
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01905.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33261342103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEE CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiwe 80 
                              Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +++++++s         + + we
  Rsa1.0_01905.1_g00001.1  26 FLTKTFEMVNDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYFWRTSTKRSASSYCemgfrkiEAERWE 111
                              9**********************************************************99999988877555777665449**** PP

                              EEESXXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                              F ++ F  g+++ll++ikr++s+
  Rsa1.0_01905.1_g00001.1 112 FMNEGFLMGQRDLLKSIKRRTSS 134
                              ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.6E-4622131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3022131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3423131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-152649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-2926131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-156476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-157789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPSSSSRAW PMPMPMPMEG LGPGPFLTKT FEMVNDPNTN HIVSWNRGGI SFVVWDPHSF  60
SATILPLYFK HNNFSSFVRQ LNTYFWRTST KRSASSYCEM GFRKIEAERW EFMNEGFLMG  120
QRDLLKSIKR RTSSSAPPSL HHSQGDPCVE LRQERHVLMM EISRLRQQEQ RARGYIQAME  180
QRIDGAERKQ RYMMSFLRRV AKNPALLQQL LEQQKKELEE ASMDQVKQET VGHVSELDAL  240
ALEMQGHGRQ RTEEVERELD DGFWEELLMN KDEDDEEEAN VNTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-212613420123Heat shock factor protein 1
5d5u_B1e-201213312131Heat shock factor protein 1
5d5v_B1e-201213312131Heat shock factor protein 1
5d5v_D1e-201213312131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01905.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373040.0AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116993.10.0PREDICTED: heat stress transcription factor A-7b isoform X2
SwissprotQ9M1V51e-146HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A078FAR01e-180A0A078FAR0_BRANA; BnaA09g40360D protein
TrEMBLM4CU451e-180M4CU45_BRARP; Uncharacterized protein
STRINGBra007739.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-129HSF family protein