PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01844.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 285aa    MW: 32543.2 Da    PI: 7.4153
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01844.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.64.9e-1127681046
                             HHHHHH.....HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 10 qvtfsk.....RrngilKKAeELSvLCdaevaviifsstgkl 46
                             q+ f k     R +++lKKA EL vLCd +++v+ +  +g+l
  Rsa1.0_01844.1_g00002.1 27 QTRFKKpfllaREKTMLKKALELTVLCDNKICVLHYDRDGNL 68
                             555544444449*************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00591474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-1131109IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3063875IPR002100Transcription factor, MADS-box
PfamPF003192.9E-63869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSFSSSSSS DSSTKTKKNK FSVRNNQTRF KKPFLLAREK TMLKKALELT VLCDNKICVL  60
HYDRDGNLVS TMPEDQSQVT DILDKYRNLS DGEKLKKSTN LSQFYNKKLV DEKKRSLTDA  120
EERKKFTKKV GDFKGSLLDQ FRILEDRVRH LRYSQDHHHQ TQQDQSPFLD VTSQENHNFP  180
EASSYGFFPA NDFSSSLIEE DPLMNFIPHD LDQQESFTNL LMSGDHVSTI TDQYLPSPAS  240
SSAVCSSNHH QGKFSVFLFN HETATFTQLP NSASSSFHQG LIGTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01844.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438138.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P6G4R61e-129A0A3P6G4R6_BRAOL; Uncharacterized protein
STRINGBo6g015480.11e-129(Brassica oleracea)
STRINGBo6g015500.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-30AGAMOUS-like 53