PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01799.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 372aa MW: 40816.5 Da PI: 8.0569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 100 | 124 | 3 | 26 |
S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG.tCkyGdrCkFaHg 26 e C+ f+ +G C++G+ C FaHg Rsa1.0_01799.1_g00003.1 100 GEVCSEFRNGGgDCSRGELCGFAHG 124 589*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.33 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.277 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 134 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000932 | Cellular Component | cytoplasmic mRNA processing body | ||||
GO:0010494 | Cellular Component | cytoplasmic stress granule | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDVEHNNSGH IGRPTVDILP RKLLSSATSP SSPCLGDKAQ RECCHDSDSD DPYAGDHFRM 60 YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYTG EVCSEFRNGG GDCSRGELCG 120 FAHGVFECWL HPSRYRTEAC KDGKHCKRKI CFFAHSPRQL RVLPPSENFV SGGGGSSASV 180 LSNKNNRCCM FCSHSPTSTL LDFSRSPTSS PPLSPADKSA VFSRLSRRHS SVAHKQALHQ 240 LITSLDSISF KEALAAAAAS SSCPVTMPVT TGATMLSNHH HRLPPWLDVG DKDLQLQQSS 300 LQYALSPSSA PSHLNGQLPP PSFFSDEFTP RGGRLSDFTV AASAAAEARD KNSFEVGHSG 360 DIDLGWVNDL LT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01799.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455754.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
Swissprot | Q9FKW2 | 1e-168 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | A0A0D3E6F3 | 0.0 | A0A0D3E6F3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QGN2 | 0.0 | A0A3N6QGN2_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6DTV8 | 0.0 | A0A3P6DTV8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g059770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44260.1 | 1e-150 | C3H family protein |