PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01783.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 312aa    MW: 35161.8 Da    PI: 9.8704
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01783.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65e-1641124186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W++  v  L+ea++ ++   +r+klk+++We+v++++    ++++  ++++qCk+k+e+++kry+ + +++ +      s++p++
  Rsa1.0_01783.1_g00006.1  41 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLY 120
                              5*************************************87766777788999*****************99997......46**** PP

                 trihelix  83 dqle 86 
                              ++l+
  Rsa1.0_01783.1_g00006.1 121 SRLD 124
                              9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2039126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEDGDSNQEH PQSLPTNHDP SSPKKPSTSS IIVVDRLKRD EWSEGAVSSL LEAYETKWVL  60
RNRAKLKGQD WEDVARHVSS RASHTKSPKT QTQCKNKIES MKKRYRSESA TADGSSWPLY  120
SRLDHLLRGN ASTSVQPQPQ LQPQAVLPLN CSAPLLLLEP PSPAVTHPPQ QPPAAQMSHG  180
SNGVGTIKEE GFKDDHKPER AMEMDTDSST PVLCREKAKV RPKKARRRYK EEKEEIAGSI  240
RWLAEVVMRT ERARMETMKE IERMRAEAEV KRGEMDLKRT EIMANTQIEI ARLFAASVHK  300
SGVDSSLRIG RN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01783.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491556.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A3P5YI550.0A0A3P5YI55_BRACM; Uncharacterized protein
STRINGBra007069.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-131sequence-specific DNA binding transcription factors