PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01782.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 374aa    MW: 42372.9 Da    PI: 8.0688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01782.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07212234123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cgk F+r  nL+ H+r H
  Rsa1.0_01782.1_g00005.1 212 HYCQICGKGFKRDANLRMHMRAH 234
                              68*******************99 PP
2zf-C2H2120.00063332347621
                              TTEEESSHHHHHHHHH CS
                  zf-C2H2   6 CgksFsrksnLkrHir 21 
                              Cg++Fsrk+ L++H +
  Rsa1.0_01782.1_g00005.1 332 CGTRFSRKDKLMSHVS 347
                              **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-6210237No hitNo description
SMARTSM003550.0028212234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-6212239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SMARTSM00355160262295IPR015880Zinc finger, C2H2-like
SMARTSM0035527300322IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNQGDHIINN GEGSVCCFSE TTITSSNPVY NNPMTAATKS SEDEDDISLS LLLNLSTMQD  60
KVHRIKSLVS FFMISTNNNN QSTESTSSLA VANIGSLVQD IITAGTSMMF TCQQLQISSN  120
NNSNFDNDTV VMNFPPQEID RDHEFMRESS TNLIGVQERG RSSFIDQTTK NLDWFGTQTL  180
NPKKNNPRYK SISGDYELVE LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT  240
REALISPTSL DKEVECSTRH YYSCPQQGCR WNQRHEKFQP LKSVICAKNH YKRSHCPKMY  300
MCKKCNVKHF SVLSDLRTHE KHCGDIKWLC SCGTRFSRKD KLMSHVSLFL GHSPAHGPPP  360
MSTLKSKMTA EVEF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01782.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469323.10.0PREDICTED: zinc finger protein STAR3-like
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3N6QNZ70.0A0A3N6QNZ7_BRACR; Uncharacterized protein
STRINGBo2g024530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-169C2H2 family protein