PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01760.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 379aa    MW: 45179.9 Da    PI: 7.2582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01760.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.91.8e-14401627128
                      NAM   7 FhPtdeelvveyLkkkvegkk.leleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                              F+ +de ++++yLk  ++++k    +++   +e+++y+++Pw L    ++++ + + F+kr++ +a gk      +sg W+   +d
  Rsa1.0_01760.1_g00005.1  40 FSQEDEIIITYYLKMMINNRKsW-PSHFlrDEEANVYNLNPWILF---NTHNPKHFLFVKRRT-EACGKTDGS--DSGCWRIMARD 118
                              66689999*********999952.33441145669*********5...344456666666655.556655544..69********* PP

                      NAM  90 kevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                              k ++s+ +g+  g kk+L f     k ++++ e+  Wvm+ey+l
  Rsa1.0_01760.1_g00005.1 119 KIIKSEeTGRILGFKKILKFCekdkKRSEQEEEERVWVMEEYKL 162
                              ***99877888**********554333445556788******97 PP
2NAM43.78.5e-1422035012128
                      NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                              +e+v++yLk  v++ +   ++++++ ++y v Pw +  +  + ++ ++ +yfF++r +k+    r+    + g W+   +d+ ++s
  Rsa1.0_01760.1_g00005.1 220 DEIVSYYLKMCVDKGNDWPSHFLQSEQVYGVAPWMIVdAdqSSAELQEGLYFFVNRTEKSG---RTDGC-DVGCWRIMRRDRVIIS 301
                              59**********9999666588**************63332222234477*****999864...66664.67************** PP

                      NAM  95 kkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                              k++++ g k+++ f                k+ + +  k +Wvm+eyrl
  Rsa1.0_01760.1_g00005.1 302 KRNKVLGFKRVFKFCvkekaepvykfwgdeKKYKVNECKVTWVMDEYRL 350
                              ***************988888888777765456667789********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.00834178IPR003441NAC domain
PfamPF023654.4E-1040162IPR003441NAC domain
SuperFamilySSF1019413.01E-2240176IPR003441NAC domain
PROSITE profilePS5100517.922209367IPR003441NAC domain
PfamPF023655.2E-9220350IPR003441NAC domain
SuperFamilySSF1019415.62E-21220365IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEDHSVTSQE DVEDHSVTSQ EDVEDHSIIF QEGMEDYSVF SQEDEIIITY YLKMMINNRK  60
SWPSHFLRDE EANVYNLNPW ILFNTHNPKH FLFVKRRTEA CGKTDGSDSG CWRIMARDKI  120
IKSEETGRIL GFKKILKFCE KDKKRSEQEE EERVWVMEEY KLVDKWKHDQ VICKIRLLLQ  180
HEVSYLLAKH LSFLPKWIIP FSRENFMPRR DLCAPNIPAD EIVSYYLKMC VDKGNDWPSH  240
FLQSEQVYGV APWMIVDADQ SSAELQEGLY FFVNRTEKSG RTDGCDVGCW RIMRRDRVII  300
SKRNKVLGFK RVFKFCVKEK AEPVYKFWGD EKKYKVNECK VTWVMDEYRL AKKKDQEGKV  360
ICRISLLFPL PLELHVRYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01760.1_g00005.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438101.10.0PREDICTED: uncharacterized protein LOC108810489
TrEMBLA0A3P5XZD00.0A0A3P5XZD0_BRACM; Uncharacterized protein
STRINGBra029571.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-70NAC family protein