PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60300.1
Common NameT13D8.18
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 322aa    MW: 37851.2 Da    PI: 5.3375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60300.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.93.2e-131913110128
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
                  +de ++++yLk  v + +   +++i+++++++ +P +      ++e+   f + + +++a gk      +sg W+  g+dk ++s+ +g+  g kk+L
  AT1G60300.1  19 EDEVIISRYLKGMVVNGDSWPDHFIEDANVFTKNPDKVF----NSERP-RFVIVKPRTEACGKTDG--CDSGCWRIIGRDKLIKSEeTGKILGFKKIL 109
                  588899*******98888666688**************5....23344.45555556666665444..479*************98778889****** PP

          NAM 107 vfykgrapkgektdWvmheyrl 128
                   f  +r+p   k +Wvm+eyrl
  AT1G60300.1 110 KFCLKRKPIDYKRSWVMEEYRL 131
                  ********************98 PP
2NAM25.44e-0819130317128
          NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.. 109
                  +yL + ++++ +e      + ++y ++P +L   ++    ++  +  F+++     t  ++ +  + gyWk    dk ++s+ g+++g kk++ fy  
  AT1G60300.1 191 FYLDAIMTSEGNEW-PSYVTNNVYCLHPLELV-DLQDrmfNDYGTCIFANK-----TCGETDK-CDGGYWKILHGDKLIKSNFGKVIGFKKVFEFYet 280
                  46666666666555.33556689999999996.332211123334444443.....3334555.478*****************************55 PP

          NAM 110 ....kgrapkgektdWvmheyrl 128
                         + + +  +W+++eyrl
  AT1G60300.1 281 vrqiYLCDGEEVTVTWTIQEYRL 303
                  443312334556899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.32210149IPR003441NAC domain
PfamPF023653.5E-819131IPR003441NAC domain
SuperFamilySSF1019414.97E-2719148IPR003441NAC domain
SuperFamilySSF1019417.72E-28159318IPR003441NAC domain
PROSITE profilePS5100518.984174319IPR003441NAC domain
PfamPF023652.7E-5180303IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDDDAAYDL IKHELLYSED EVIISRYLKG MVVNGDSWPD HFIEDANVFT KNPDKVFNSE  60
RPRFVIVKPR TEACGKTDGC DSGCWRIIGR DKLIKSEETG KILGFKKILK FCLKRKPIDY  120
KRSWVMEEYR LTNNLNWKQD HVICKIRFMF EAEISFLLSK HFYTTSESVL ENELLPSYGY  180
YLSNTQEEDE FYLDAIMTSE GNEWPSYVTN NVYCLHPLEL VDLQDRMFND YGTCIFANKT  240
CGETDKCDGG YWKILHGDKL IKSNFGKVIG FKKVFEFYET VRQIYLCDGE EVTVTWTIQE  300
YRLSKNVKQN KVLCVIKLTY DR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184066980.0
Genevisible264273_s_at1e-167
Expression AtlasAT1G60300-
AtGenExpressAT1G60300-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ0565000.0DQ056500.1 Arabidopsis thaliana apical meristem formation protein-related (At1g60300) mRNA, complete cds.
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176235.10.0NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLO807520.0O80752_ARATH; Apical meristem formation protein-related
STRINGAT1G60300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]