PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01744.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 292aa    MW: 33934.5 Da    PI: 8.63
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01744.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.8e-171658244
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             ri n+  r +t+ kRr+ + KKA E S+LC+++ ++i++++t 
  Rsa1.0_01744.1_g00001.1 16 RIANDKTRMTTYKKRRACLYKKAGEFSTLCGVQTCLIVYGPTK 58
                             89**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-12666IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-7929IPR002100Transcription factor, MADS-box
CDDcd002663.00E-231088No hitNo description
SuperFamilySSF554556.54E-181294IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.4371267IPR002100Transcription factor, MADS-box
PfamPF003192.1E-161658IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRVKRMDHDK VVDLQRIAND KTRMTTYKKR RACLYKKAGE FSTLCGVQTC LIVYGPTKAT  60
DEVISKPEIW PEDETKARDI IRRYRDTAPN SCRKEAHVET FVNDIGKAKE TENHNNTRGI  120
HNKNKYCCWE EKLDKCSQEQ LRGIFDDVGN KLHEAVMRQN RNAIRAHNQA MESHYMSQYY  180
AGHQQQQSLM FPYNNMSFPL FSSPHDDQIP MEPILVDNFA DSVVNQGFMM SKGNEGTQFM  240
QRQAPYHNLE AVVQRSASFN LNPFLGYQVP YNIPRLPGNQ AEIWDFMAKK PI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01744.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453520.10.0PREDICTED: agamous-like MADS-box protein AGL82
SwissprotQ9FIM01e-122AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBLA0A3P6E8N11e-176A0A3P6E8N1_BRAOL; Uncharacterized protein
STRINGBra002611.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-124AGAMOUS-like 82
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]