PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01732.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 402aa MW: 45412.9 Da PI: 8.8131 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4.2e-32 | 218 | 271 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Rsa1.0_01732.1_g00002.1 218 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 271 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 215 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 216 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-24 | 218 | 271 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-7 | 219 | 270 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEGVFLEKPK SNTTTSTLPD LSLNISLPDI TSKEEYRRPS QTDNNRSSNF ELSLSHHHNP 60 SSNPTTRIIH CPDPRNLNFP HHQHYNNPIL NGGSLHQRVD ESDINNIHRP IRGIPVYQNR 120 SFPFHQQTSH SSLPSLGGGG NLDQISVSIS PSGYNNAYRS LQSSPRLRGV PLHHHHHHHH 180 HNHYGVVGSS DSSSPHLHGM LRSRFLPKMP TKRSMRAPRM RWTSSLHARF VHAVELLGGH 240 ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTNKPAA SSDGSGEEEI GINGNEVRHQ 300 SSTDQRAQSD DTSSHQEVDF PSTQPRWSNS SRETWPLSSD YSSDIDTMIR TSSTSVISHH 360 QRSILQNQEQ QRSNEQTKRC GDVSCNNPSL EFTLGRPDWH EK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 219 | 273 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 219 | 273 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 219 | 273 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 219 | 273 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 219 | 273 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01732.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY030192 | 0.0 | AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds. | |||
GenBank | AY048688 | 0.0 | AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds. | |||
GenBank | BT026436 | 0.0 | BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442492.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
Swissprot | Q93WJ9 | 0.0 | KAN1_ARATH; Transcription repressor KAN1 | ||||
TrEMBL | A0A3P6E0D0 | 0.0 | A0A3P6E0D0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g163080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6606 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 0.0 | G2-like family protein |