PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01633.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 504aa    MW: 56931.9 Da    PI: 6.9541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01633.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-1323871795
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                             +l  +f+++h ++      l + d s + W+vkl  ++++    l++GW+eF+ka+  ++gD++vF++dg++ f  +v 
  Rsa1.0_01633.1_g00002.1 23 RLGDEFLRNHTKV------LLISDASDKIWKVKL--DGNR----LAGGWEEFAKAHSFRDGDVLVFRHDGDEIF--HVA 87
                             5666777777544......88899**********..9999....***********************9998888..654 PP
2B365.39e-21149246199
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+ + +++++l ++rl l+k+f+     +++  ++ ++ l +e+gr+W++ l+ + +sg +++++GW +F++angL +gD++ Fkl
  Rsa1.0_01633.1_g00002.1 149 FLRARVTPYSLIKDRLDLSKDFTVVSfnEHI--KPCEIDLVNEKGRRWTLLLSKNTSSGVFYIRRGWVNFCSANGLSQGDICKFKL 232
                              667788999*************755534666..5558***************99999999*************************9 PP

                              -SSSEE..EEEEE-S CS
                       B3  85 dgrsefelvvkvfrk 99 
                               + +e+++v++++++
  Rsa1.0_01633.1_g00002.1 233 AE-DEERPVLRLCSS 246
                              87.666699999986 PP
3B364.81.3e-20293390199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                              f+++ ++++ l++g+l+++  f++e g+kk  s ++tl +++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l
  Rsa1.0_01633.1_g00002.1 293 FLTIKLTPNRLQTGQLYISSVFINESGIKK--SGEITLLNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLEL 376
                              6778889999*************9999885..459***************9966655556************************** PP

                              -SSSEE..EEEEE-S CS
                       B3  85 dgrsefelvvkvfrk 99 
                              +  +++++v+++++k
  Rsa1.0_01633.1_g00002.1 377 IC-EDANPVLRFCSK 390
                              *9.8999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.194792IPR003340B3 DNA binding domain
SMARTSM010198.0E-131092IPR003340B3 DNA binding domain
CDDcd100172.46E-102286No hitNo description
PfamPF023624.5E-82484IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-132688IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-123288IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-18149246IPR003340B3 DNA binding domain
SMARTSM010199.3E-24149247IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72149247IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-17151247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-16153246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-17159244No hitNo description
Gene3DG3DSA:2.40.330.104.9E-18289390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18291390IPR015300DNA-binding pseudobarrel domain
CDDcd100179.96E-15292389No hitNo description
PfamPF023624.2E-21293390IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844293391IPR003340B3 DNA binding domain
SMARTSM010191.1E-24293391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MRITPKCSLF HHRFITGDKP VLRLGDEFLR NHTKVLLISD ASDKIWKVKL DGNRLAGGWE  60
EFAKAHSFRD GDVLVFRHDG DEIFHVAASP RSNSCGTSHH ASPSFVDTDD AESDDDYSES  120
DDDEEEECED EAGDILVNKT KKTGGFSCFL RARVTPYSLI KDRLDLSKDF TVVSFNEHIK  180
PCEIDLVNEK GRRWTLLLSK NTSSGVFYIR RGWVNFCSAN GLSQGDICKF KLAEDEERPV  240
LRLCSSSNSH EEEEECLEAD AAKIGSVGGC SKEKRRLDEC SKRKKKNNNP SKFLTIKLTP  300
NRLQTGQLYI SSVFINESGI KKSGEITLLN QDGRKWPSYL QMTGQCGSEW FYLRHGWREM  360
CKANGVKVND SFVLELICED ANPVLRFCSK VDNKGEGNRR PGKKRAHEEA PMVETEGRKR  420
GRPRLSNRHA TNSSNLRRTQ QESCSVADQV ANVKLSILDT LNTVRQFRAE LEAREKNLEA  480
TLLEVDGLGE RILEISQSLT SNNV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271284KEKRRLDECSKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01633.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447207.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D1790.0M4D179_BRARP; Uncharacterized protein
STRINGBra010228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-163B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]