PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01603.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 938aa MW: 107727 Da PI: 9.6647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01603.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.6	4e-43	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrF tdeel+veyL++kv+g++++l + i+e+d+yk++ w Lp+k+ +ek+wyfF++rd+ky++g+ +n ++ sgyWkat Rsa1.0_01603.1_g00007.1 14 LPAGFRFYQTDEELMVEYLCRKVAGHDFSL-QLIAEIDLYKFDAWVLPSKALFGEKDWYFFTPRDRKYPNGSIPNWVAGSGYWKAT 98 799************************9.89***********8777899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk + + +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Rsa1.0_01603.1_g00007.1 99 GTDKVIST-EGRRVGVKKALVFYVGKAPKGTKTNWIMHEYRL 139 99999.9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-51	10	149	IPR003441	NAC domain
PROSITE profile	PS51005	47.522	14	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-21	15	139	IPR003441	NAC domain
PROSITE profile	PS50878	16.194	229	491	IPR000477	Reverse transcriptase domain
Pfam	PF00078	6.7E-43	290	491	IPR000477	Reverse transcriptase domain
CDD	cd01650	1.11E-34	293	491	No hit	No description
SuperFamily	SSF56672	6.23E-14	298	457	No hit	No description
Pfam	PF13966	8.9E-16	753	837	IPR026960	Reverse transcriptase zinc-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MGIQELDPLT QLSLPAGFRF YQTDEELMVE YLCRKVAGHD FSLQLIAEID LYKFDAWVLP 60 SKALFGEKDW YFFTPRDRKY PNGSIPNWVA GSGYWKATGT DKVISTEGRR VGVKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK KQSSAQDLHN SNLVTREYSH NGSSTSSSSH 180 QYEGVLEYKS GFLSLVREPS FDWANSTGHN SAPELGSSHN VPSLRYGDVV AVYTSEEGNK 240 AHQQAEVIPR FNNSGVLSYD QGFSVEPVNG FRHSGQQPSG FGLILLVENL LLATEIVKDY 300 HKDDISPRCA MKIDIAKAFD SVNWSFLLGT LKALHLPDQF IRWIELCVCT PSFSVQVNGE 360 LAEFFQSKRG LRQGCALSPY LFVVCMNVLS HMIDKAAAGN QIGYHPRCKN ILLTHLCFAD 420 DLLVFTDGSK RSIEGVLKIF EKFAMMSGLK ISLEKSTLYT AGISNSQEEG ILARFPFESG 480 KLPVRYLGLP LLTRKMTIND YMPLVEKIKK RMKSWTGRFL SHGGRLQLIN SVITSMANFW 540 LSAFSLPGSC LKEIERLCSA FLWSGPELNT SKAKVNWKDI CLPKQEGGLG IRPLKEINNV 600 LCLKLIWRLF SNRSSLWVSW IHCYLIRKGS FWSVKNNSVA GSWMWKKLLK LRDLAKLFHK 660 MEVNNGKFTS FWYDMWSDLG CLRDYLRDGG SIEMGIKEND LMVEAFRRHR RRRHRIQIFN 720 DVEEEIERIR RSVNQEDDIP LWKQPDNKFS KQFSTKKTWL SLRQPLPECT WSRGIWFPYS 780 TPKYSFHMWL AIKNRLQTMD RILQWNSAVD GVCVLCKDVQ ESCHHLFFSC SYSSKVWREA 840 VGGILKEDFT TQWQEIIEIA SQGRRNSTET FLFRYALQVL THSIWRERNA RKHGEQEVDA 900 RTLAKIVDKM IRLKLLLVKG KGKKYLEESL STWFATRG

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MGIQELDPLT QLSLPAGFRF YQTDEELMVE YLCRKVAGHD FSLQLIAEID LYKFDAWVLP  60
SKALFGEKDW YFFTPRDRKY PNGSIPNWVA GSGYWKATGT DKVISTEGRR VGVKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK KQSSAQDLHN SNLVTREYSH NGSSTSSSSH  180
QYEGVLEYKS GFLSLVREPS FDWANSTGHN SAPELGSSHN VPSLRYGDVV AVYTSEEGNK  240
AHQQAEVIPR FNNSGVLSYD QGFSVEPVNG FRHSGQQPSG FGLILLVENL LLATEIVKDY  300
HKDDISPRCA MKIDIAKAFD SVNWSFLLGT LKALHLPDQF IRWIELCVCT PSFSVQVNGE  360
LAEFFQSKRG LRQGCALSPY LFVVCMNVLS HMIDKAAAGN QIGYHPRCKN ILLTHLCFAD  420
DLLVFTDGSK RSIEGVLKIF EKFAMMSGLK ISLEKSTLYT AGISNSQEEG ILARFPFESG  480
KLPVRYLGLP LLTRKMTIND YMPLVEKIKK RMKSWTGRFL SHGGRLQLIN SVITSMANFW  540
LSAFSLPGSC LKEIERLCSA FLWSGPELNT SKAKVNWKDI CLPKQEGGLG IRPLKEINNV  600
LCLKLIWRLF SNRSSLWVSW IHCYLIRKGS FWSVKNNSVA GSWMWKKLLK LRDLAKLFHK  660
MEVNNGKFTS FWYDMWSDLG CLRDYLRDGG SIEMGIKEND LMVEAFRRHR RRRHRIQIFN  720
DVEEEIERIR RSVNQEDDIP LWKQPDNKFS KQFSTKKTWL SLRQPLPECT WSRGIWFPYS  780
TPKYSFHMWL AIKNRLQTMD RILQWNSAVD GVCVLCKDVQ ESCHHLFFSC SYSSKVWREA  840
VGGILKEDFT TQWQEIIEIA SQGRRNSTET FLFRYALQVL THSIWRERNA RKHGEQEVDA  900
RTLAKIVDKM IRLKLLLVKG KGKKYLEESL STWFATRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-92	1	156	7	173	NAC domain-containing protein 19
3swm_B	5e-92	1	156	7	173	NAC domain-containing protein 19
3swm_C	5e-92	1	156	7	173	NAC domain-containing protein 19
3swm_D	5e-92	1	156	7	173	NAC domain-containing protein 19
3swp_A	5e-92	1	156	7	173	NAC domain-containing protein 19
3swp_B	5e-92	1	156	7	173	NAC domain-containing protein 19
3swp_C	5e-92	1	156	7	173	NAC domain-containing protein 19
3swp_D	5e-92	1	156	7	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01603.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ670121	1e-148	KJ670121.1 Brassica napus NAC transcription factor 55-1 (NAC55-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674113.1	0.0	uncharacterized protein LOC106378549
TrEMBL	A0A178UT27	0.0	A0A178UT27_ARATH; Uncharacterized protein
STRING	XP_010451093.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-137	NAC domain containing protein 3