PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01600.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 534aa    MW: 60116.7 Da    PI: 7.197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01600.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.5e-13291071297
                              HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               ++ l +p  f+ +h  g ++   kt +l++  s ++W+vk+  ++ +    lt+GW++F   ++L+ gD+++F+++g++ f  +v
  Rsa1.0_01600.1_g00010.1  29 HTH-LNIPVAFFLKHlqG-NNDHIKTAKLTTdASAKTWSVKV--DGVG----LTDGWEDFSVGHDLRIGDIIIFRHEGEMAF--HV 104
                              444.99**********63.4444456777664899*******..5555....************************999999..88 PP

                              EEE CS
                       B3  95 kvf 97 
                              ++f
  Rsa1.0_01600.1_g00010.1 105 TAF 107
                              877 PP
2B362.66.2e-20162246588
                              -..-HHHHTT-EE--HHH.HTT---..--SE.EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeeskt.ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               +++++l+s+rl++p  fa+++g+++ ++k+ ++l +e+grsW+++++y+k + +++ + GW++F+ +ng+k g   +Fkl++rs
  Rsa1.0_01600.1_g00010.1 162 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEiIVLLNEEGRSWNLNMTYNKVGMQTFVRPGWRRFCAENGMKKGHHYTFKLVRRS 246
                              57889999**************777666555167889*******************************************99853 PP
3B3634.7e-20273359692
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                              ++sd+l+++ l+l ++f++++g++k  s ++tl++e+g sW + l++  +s+r++l+ GW+ F+++ng+k+ D ++Fkl+++ +++
  Rsa1.0_01600.1_g00010.1 273 VRSDSLSTDKLYLQRHFVTANGLEKGLS-EITLKNEWGGSWVLGLRHYESSNRTFLGPGWNTFCQENGIKAEDPFMFKLVETgDKR 357
                              679*********************9887.**************************************************9884554 PP

                              .. CS
                       B3  91 el 92 
                               l
  Rsa1.0_01600.1_g00010.1 358 VL 359
                              33 PP
4B349.95.6e-16436531297
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              +  +++ ++lk+++l lp  f++ + ++k  ++++tl   +g ++  v+l  +k+sg++ ++kGW+eF++a+g+k+g++++++l++
  Rsa1.0_01600.1_g00010.1 436 VRLTLTQSALKTSILHLPLAFTRMNCINK--PRKITLLGIDGvKKQVVNLLKNKSSGTMRIGKGWREFCDAHGVKVGESFLLELIW 519
                              5667789999999************8775..558********6666667777999999***************************9 PP

                              S.SEE..EEEEE CS
                       B3  87 r.sefelvvkvf 97 
                              + +e+ +v+k++
  Rsa1.0_01600.1_g00010.1 520 EdNEAIPVLKFC 531
                              988888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2014112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-1914117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.20917110IPR003340B3 DNA binding domain
CDDcd100176.94E-1518107No hitNo description
SMARTSM010196.0E-1920110IPR003340B3 DNA binding domain
PfamPF023622.2E-731105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19151246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-17154250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.508158257IPR003340B3 DNA binding domain
CDDcd100173.06E-17159253No hitNo description
SMARTSM010195.5E-23159257IPR003340B3 DNA binding domain
PfamPF023623.5E-18161252IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-16262362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.662268364IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-16269362IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-19269365IPR003340B3 DNA binding domain
PfamPF023627.9E-19273361IPR003340B3 DNA binding domain
CDDcd100172.72E-13274362No hitNo description
SuperFamilySSF1019366.28E-18431531IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-16431532IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-15433523No hitNo description
PROSITE profilePS5086311.998435533IPR003340B3 DNA binding domain
SMARTSM010191.7E-21435534IPR003340B3 DNA binding domain
PfamPF023621.7E-14435531IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MKCSRMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHLQGNNDHI KTAKLTTDAS  60
AKTWSVKVDG VGLTDGWEDF SVGHDLRIGD IIIFRHEGEM AFHVTAFGPS CCDIQYTSPS  120
SHNINEDCQD QTTNNTGEKR KRVKNPRTNE DSSSDQSQFV AHVSPSSLSS DRLYIPTGFA  180
RSNGLDNMSG KEIIVLLNEE GRSWNLNMTY NKVGMQTFVR PGWRRFCAEN GMKKGHHYTF  240
KLVRRSAPLI IRLSHAEPAT ESSLHHSYYV GSVRSDSLST DKLYLQRHFV TANGLEKGLS  300
EITLKNEWGG SWVLGLRHYE SSNRTFLGPG WNTFCQENGI KAEDPFMFKL VETGDKRVLL  360
LCTFNGGKTP LDCPEDSDDN VHSLSSDTSS EDDSKEESQE SDKESIEDED NSQQCIVEKN  420
SLRCICSSPY SKHRFVRLTL TQSALKTSIL HLPLAFTRMN CINKPRKITL LGIDGVKKQV  480
VNLLKNKSSG TMRIGKGWRE FCDAHGVKVG ESFLLELIWE DNEAIPVLKF CTTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01600.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473930.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-135B3 family protein