PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01571.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 261aa    MW: 29428.8 Da    PI: 4.8161
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01571.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM317.1e-10159034116
                      NAM  34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkg 116
                               +e+ di++ +P+dL    + +e++wyf++++         ++r+t++++Wk+tg++++vl+   +++lvg+k+ +++ + ++++g
  Rsa1.0_01571.1_g00005.1  15 PEEChDIFSKHPRDLA--GYPRETHWYFYCRKL--------SSRVTSHSIWKQTGEETDVLDPknNDALVGIKRPFTLLDHEEESG 90 
                              455579*********7..345789******975........47999***************98666677*******9997777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.621127IPR003441NAC domain
SuperFamilySSF1019412.22E-91990IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEEEPMKVRN VRYVPEECHD IFSKHPRDLA GYPRETHWYF YCRKLSSRVT SHSIWKQTGE  60
ETDVLDPKNN DALVGIKRPF TLLDHEEESG DILLSDEDEP SQHNCKYCSL VLKCGVSDEI  120
LVAITYQIVP ADTQYAEIPL AAVTSTHQKK GIYITSRDRP EGQSKEEPSV NPVTGDSVKF  180
GERFGETPFM LTVSLSTIRS PVDSTTTGKE QEKVISDQAT TADSDSTPGF KRCWEASMCS  240
LQSKRIRANC NNDSEIAKED L
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01571.1_g00005.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479679.11e-85PREDICTED: NAC domain-containing protein 5-like
TrEMBLA0A0D3C0D77e-63A0A0D3C0D7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9B57e-63A0A3P6C9B5_BRAOL; Uncharacterized protein
STRINGBo4g140840.11e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-39NAC family protein