PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01519.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YC

Protein Properties

Length: 301aa MW: 33324.2 Da PI: 4.9837

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01519.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	1.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v+ ++fdfl ++v + Rsa1.0_01519.1_g00005.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTVSSLHLKNCVETYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.33E-19	4	94	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGN GQADATMDDR TISKRRKPTG 120 DEASDSDEDL KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAERELLLQ REMETEPPTI 180 LSTPPPQLTQ DGITMPAPTT QQDVEKKDAD DMSTHAKQEL QSPKAGNDTN SGLGRDFDLN 240 TQSLDMVEAK PPVVVTASRE SKPEEYPGWS MSDIGNMDPM QLASMGKRLD EEEEDYDEEE 300 V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	156	RGRGRGRGRG
2	147	157	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01519.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC818622	1e-94	KC818622.1 Brassica napus transcription factor subunit NF-YC11A (NF-YC11A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446284.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A397XN84	1e-157	A0A397XN84_BRACM; Uncharacterized protein
TrEMBL	M4CYJ8	1e-157	M4CYJ8_BRARP; Uncharacterized protein
STRING	Bra009295.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-99	nuclear factor Y, subunit C11