PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01504.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 285aa MW: 32917.7 Da PI: 8.8058

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01504.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.5	7.8e-47	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPt+eel ++yLk+ v gk ++ evi ++iy+++PwdLp+ k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+ Rsa1.0_01504.1_g00004.1 8 PGFRFHPTEEELTDYYLKNMVYGKFSKV-EVIGFLNIYRHDPWDLPRLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGS 92 9*********************9999.99***********8778899***************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s ++++glkktLvfy+grap g+ktdWvm+eyr+ Rsa1.0_01504.1_g00004.1 93 DRKIISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134 987557778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.499	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	7.72E-55	7	152	IPR003441	NAC domain
Pfam	PF02365	3.4E-25	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSKEIELPGF RFHPTEEELT DYYLKNMVYG KFSKVEVIGF LNIYRHDPWD LPRLSKIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120 GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMN QTCPNSPLSS 180 SETVSYVGKE EDLMMNSFPF PQASAMQEAN NNFMLQGHTD NAKNEEKQRE TEMKESSSSL 240 KLPCGVLPLT ELQLPKQGLE WGQDQFLSIS PWLQNLTPII NLLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	8	152	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01504.1_g00004.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353307	0.0	AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457954.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	4e-89	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A078GNG8	0.0	A0A078GNG8_BRANA; BnaC09g09210D protein
TrEMBL	A0A0D3E338	0.0	A0A0D3E338_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E184	0.0	A0A3P6E184_BRAOL; Uncharacterized protein
STRING	Bo9g024360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-174	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]