PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01432.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 243aa    MW: 26622.9 Da    PI: 8.1453
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01432.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18163197135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Rsa1.0_01432.1_g00004.1 163 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 197
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-842241IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.47E-14156219No hitNo description
SMARTSM004011.1E-15157207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385157193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-13161195IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-13162209No hitNo description
PfamPF003206.5E-16163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVYGLSSPD LLPIDDLLDF SKDEIFSSSS STIVSSATSS AASSSENPFN FPSTASTSFH  60
TSPPLTDFPH DLCVPSDDAA HLEWLSRFVD DSFSDYPANP LTMTVRPEMS FTGKPRSRRS  120
RALVPSVAGT WAPTPEAEIC RSVAKRKPTK KLEAAEGGGA RRCTHCASEK TPQWRTGPLG  180
PKTLCNACGV RFKSGRLVPE YRPASSPTFV PTQHSNSHRK VMELRRQKEQ IESAVHLLPF  240
QPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01432.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444168.11e-176PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-119GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A397YRL41e-139A0A397YRL4_BRACM; GATA transcription factor
TrEMBLM4CGT61e-139M4CGT6_BRARP; GATA transcription factor
STRINGBra003419.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-116GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]