PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01397.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 345aa    MW: 38842.9 Da    PI: 6.3091
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01397.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.72.3e-2686179184
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                              +Wt+++v++Li+a++++++++  +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++
  Rsa1.0_01397.1_g00006.1  86 KWTDKMVKLLITAVSYIGDDSCMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVV 171
                              7**************8777666432234456667**********************************************669999 PP

                 trihelix  77 stcpyfdq 84 
                              ++ +++d+
  Rsa1.0_01397.1_g00006.1 172 ENPKLLDS 179
                              99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2484207No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDGKLTQGGG ASSFGGFDMR VHHPDSMNQQ HLQGLPFTMV TGQTCDHHHK GERESDDDEE  60
PSFNEESGGD GHNNKSAKGS PWQRVKWTDK MVKLLITAVS YIGDDSCMDG GSRRKFAALQ  120
KKGKWKSVSK VMSERGYHVS PQQCEDKFND LNKRYKKLND MLGRGTSCQV VENPKLLDSI  180
GFLNDKEKDD VRKIMSSKQL FYEEMCSYHN GNRLHLPHDL ALQRSLQLAL RSRDDHENHQ  240
VEDLDDEDHD EHDDDVDRGD CRVVHYGGGG GGPLKKGRQS HSHEDGDHQG HVNSLECSKV  300
TLAHQMPFPQ GGAESVRSAS VQKQWIESRT LELEEQKLQI QVGEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01397.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458501e-146AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913781e-146AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026841e-146CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F41e-146AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447865.10.0PREDICTED: uncharacterized protein LOC108819350
TrEMBLA0A3P6CBA00.0A0A3P6CBA0_BRACM; Uncharacterized protein
STRINGCagra.1632s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-156sequence-specific DNA binding transcription factors