PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01366.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 334aa    MW: 36915.1 Da    PI: 7.8108
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01366.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18233266134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Rsa1.0_01366.1_g00005.1 233 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 266
                              99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-911323IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78227263IPR000679Zinc finger, GATA-type
SMARTSM004019.0E-16227277IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15231290No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14231264IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.02E-14232279No hitNo description
PfamPF003204.4E-16233266IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MFGQSFPEDL DCGNFFDNMD DILDFPGGDI DVGFGIGDSD SFPNIWTSHN DTWPAASNPL  60
FSSNTNSDTS PELYVPFEDI VKVERPQSVV EESLVEKKED SFPTNTDSSS SHSHFRSSSP  120
VSVLESSSSS SHTTNTTSLV LPGKPGRPRT KRPRPQVQEK DRVNENAFGA DSRLIIRIPT  180
QFLSDHSKMI TKKKKKKAKV VVSSSSWSGI DLETNGNKNV DSCSSEQNPV RKCMHCEVTK  240
TPQWRLGPMG PKTLCNACGV RYKSGRLFPE YRPASSPTFT PALHSNSHKK VAEMRNKRCS  300
NVSYTNEEND LQDLVLSNAY IGIGVGKSQR VGKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01366.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483684.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_018483685.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-162GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A3P6CU000.0A0A3P6CU00_BRACM; GATA transcription factor
STRINGBo4g118340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-78GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]