PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01323.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 433aa MW: 47341.2 Da PI: 7.4835 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.3e-28 | 163 | 216 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH+rFveaveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ Rsa1.0_01323.1_g00007.1 163 KKVDWTPELHRRFVEAVEQL-GLEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 216 5899****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.075 | 159 | 218 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-27 | 160 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-26 | 163 | 216 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.56E-17 | 163 | 219 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-8 | 165 | 214 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MLALSPARNS TTDDGESEFL ATSCGFINPE EDFSEFAVHG DLLDIIDFDD LFSVAGDALP 60 DLKMDPEILA GELSDHMNAS STITTTTSSS EKTDSQGKTN KMGTSGKGEE VVSKRDHNES 120 TPVAETMVNY DGDSSRKRKH SSISSGSSKN NGISNNEGKR KVKKVDWTPE LHRRFVEAVE 180 QLGLEKAVPS RILELMGVHC LTRHNVASHL QKYRSHRKHL LAREAEAANW TRKRHIYGLD 240 STAANTNGRN KNGWLAPAPT IGYPPPPPSA VASLPAHHHH FRPLHVWGHP TADQSVMPQV 300 WPKHLHPPST AMATPPFWVS KTPYWPKIHN GTSTQYLPTV ATRFRTPPVA GIPQALPPHY 360 MVYNYKPDHG LGGSRSLVDL HPSNESVDAA IGDVLTRPWL PLPLGLNPPA VEGVITELHR 420 HGVSKVPPAA SCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-15 | 167 | 218 | 6 | 57 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01323.1_g00007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675958.1 | 0.0 | transcription activator GLK1-like isoform X1 | ||||
Swissprot | Q9SIV3 | 0.0 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A3N6RWL5 | 0.0 | A0A3N6RWL5_BRACR; Uncharacterized protein | ||||
STRING | Bo7g003410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-172 | GBF's pro-rich region-interacting factor 1 |