PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01318.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 281aa    MW: 31463.3 Da    PI: 8.4621
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01318.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.1e-332377155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Rsa1.0_01318.1_g00003.1 23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 77
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2852080IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-322081IPR009057Homeodomain-like
SuperFamilySSF466891.97E-162380IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-242378IPR006447Myb domain, plants
PfamPF002491.6E-92576IPR001005SANT/Myb domain
PfamPF143792.8E-19128173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MERVNLGGLG YENGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADKAT PKSVLKLMGL  60
KGLTLYHLKS HLQKYRLGQQ QAKKQNRTEQ NKENAGSSYV HFDNCSQGGI SNESRFDNHL  120
RQSGNVPFAD TLRHQVDAQQ RFQEQLEVQR KLQMRMEAQG KYLLTLLEKA QKSMPCGGNG  180
AETDKGQFSD FSLALSGLVG DHDHKNDKTG LVTDISHVNG DLTEDFRLCG EREKRETGDE  240
GVKPESGFVH FDLNSKGGYD LLNSGKYGIE MKPNMIADRH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01318.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937770.0AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.
GenBankBT0120030.0BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480474.10.0PREDICTED: myb family transcription factor PHL11
SwissprotC0SVS40.0PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A397Z6C10.0A0A397Z6C1_BRACM; Uncharacterized protein
TrEMBLM4E8G50.0M4E8G5_BRARP; Uncharacterized protein
STRINGBra025071.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-172G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]