PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01310.1_g00012.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 249aa MW: 28309.9 Da PI: 9.3753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01310.1_g00012.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.8	7.2e-52	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelvv+yLk+kv +++l++ ++i++vd+++++PwdLp + eke yfFs+r+ ky++g+r+nrat+sgyWkat Rsa1.0_01310.1_g00012.1 14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPA-SIIPDVDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATESGYWKAT 95 79**************************.89***********44...4789************************* PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+v+++ +++ vglkktLvfykg+ p+g++tdW+mheyrl Rsa1.0_01310.1_g00012.1 96 GIDKRVVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138 99998857777**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-60	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.009	14	160	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDKINLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPASIIPDVD VCRADPWDLP 60 GNLEKERYFF STREAKYPNG NRSNRATESG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK 120 GKPPHGSRTD WIMHEYRLSS SPPSSIGPTQ NWVLCRIFLK KRAGDKNEDE GDNRNLRCNN 180 DQLEIITPNQ TEDKTEPIFF DFMRKERTTD LKLLPSSPSS GHASSGVTTE IFSSDEETSS 240 SCNSLRRNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-51	12	166	18	174	NAC domain-containing protein 19
3swm_B	9e-51	12	166	18	174	NAC domain-containing protein 19
3swm_C	9e-51	12	166	18	174	NAC domain-containing protein 19
3swm_D	9e-51	12	166	18	174	NAC domain-containing protein 19
3swp_A	9e-51	12	166	18	174	NAC domain-containing protein 19
3swp_B	9e-51	12	166	18	174	NAC domain-containing protein 19
3swp_C	9e-51	12	166	18	174	NAC domain-containing protein 19
3swp_D	9e-51	12	166	18	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01310.1_g00012.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352817	0.0	AK352817.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-E01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472969.1	0.0	PREDICTED: NAC domain-containing protein 83
Swissprot	Q9FY93	1e-142	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0D3B0X1	1e-158	A0A0D3B0X1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6A9P0	1e-158	A0A3P6A9P0_BRAOL; Uncharacterized protein
STRING	Bo3g009040.1	1e-159	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-131	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]