PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01307.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 129aa MW: 14679.1 Da PI: 10.6968 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.1 | 3e-16 | 8 | 89 | 17 | 97 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P++r+kki+k+d+d+++i +ea l++ + elf+ l+ +s + a e+kr+t++ + +av+r + + +fl+d p Rsa1.0_01307.1_g00003.1 8 IRPEFPITRVKKIMKVDKDINKINSEALHLVTYSTELFLRFLAEKSSVVAAEKKRKTVNLDHLRTAVKRHQpTREFLLDSLP 89 5678***************************************************************99764789****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.14E-17 | 11 | 77 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.6E-20 | 11 | 74 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-20 | 12 | 89 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MAEEEETIRP EFPITRVKKI MKVDKDINKI NSEALHLVTY STELFLRFLA EKSSVVAAEK 60 KRKTVNLDHL RTAVKRHQPT REFLLDSLPL PSAQPVRVTK TVSDKKPPPV GTRRIDAFFS 120 KGKAKVDSP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01307.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797140 | 1e-176 | KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480660.1 | 1e-87 | PREDICTED: nuclear transcription factor Y subunit C-5 | ||||
TrEMBL | A0A078H1V6 | 6e-82 | A0A078H1V6_BRANA; BnaC07g16980D protein | ||||
STRING | Bo7g065250.1 | 3e-79 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-72 | nuclear factor Y, subunit C13 |