PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01306.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 326aa    MW: 37647.6 Da    PI: 8.4487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01306.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.6e-101812811128
                      NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                              de ++ +yLk+ +e+     +++ +++d+++ +P++          ++ f + + +++a gk      + g W+   +dk ++++ 
  Rsa1.0_01306.1_g00009.1  18 DELILLRYLKPMIENGASWPQHFYEDADVFNKNPSKVF--------KTVFVIVKPRTEACGKTDG--CDYGCWRIIARDKMIKNEe 93 
                              5556789*****999996666789999********995........2356666667676665544..468*************987 PP

                      NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +g+l g kk+L f   k ++ +  k +Wvm+eyrl
  Rsa1.0_01306.1_g00009.1  94 TGKLLGFKKILKFCgkKTTRAREYKRSWVMEEYRL 128
                              8889**********543344455799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.9938146IPR003441NAC domain
SuperFamilySSF1019416.02E-2118144IPR003441NAC domain
PfamPF023653.6E-718128IPR003441NAC domain
SuperFamilySSF1019411.11E-20170324IPR003441NAC domain
PROSITE profilePS5100514.609173325IPR003441NAC domain
PfamPF023651.6E-4180309IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAADNYLRII DELLGGGDEL ILLRYLKPMI ENGASWPQHF YEDADVFNKN PSKVFKTVFV  60
IVKPRTEACG KTDGCDYGCW RIIARDKMIK NEETGKLLGF KKILKFCGKK TTRAREYKRS  120
WVMEEYRLPS KLNPKQDHVI CKIRLLFRNE ISSLLSKHFS YSSGPLPATT QPLPAYGYRL  180
PNVQEVGPYY LQHLVGHENK WPSHVTNDVY CMHPSALVDP YQDQMFARLG ICIFANRAEA  240
SGYTDGCDRG CWRIVVGDKP ISSITVKDET VGYMKVFKFC EEDDKAKHFY TDPNGEVVLL  300
NWIMEEYRLA EEVMKDKVLC VIKLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01306.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467294.10.0PREDICTED: uncharacterized protein LOC108838937
TrEMBLA0A0D3EBI90.0A0A0D3EBI9_BRAOL; Uncharacterized protein
STRINGBo9g122180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-93NAC family protein