PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01306.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 328aa    MW: 38021.2 Da    PI: 5.5143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01306.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.88.3e-101813111128
                      NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                              de ++ +yLk+ +e+     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ 
  Rsa1.0_01306.1_g00007.1  18 DELILLRYLKPMIENGASWPQHFSEDADVFNKNPSNTF-----NPEDTVFVIVNPRTEACGKTDGC--DYGSWRIMARDKLIKNEe 96 
                              5556789******99996665778999********985.....34566777777777777655544..689***********9987 PP

                      NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +gel g kk+L f   k ++ +  k +Wvm+eyrl
  Rsa1.0_01306.1_g00007.1  97 TGELLGFKKILKFCvkKTTRAREYKRSWVMEEYRL 131
                              8899*********9653444555799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.7588149IPR003441NAC domain
PfamPF023655.3E-718131IPR003441NAC domain
SuperFamilySSF1019417.06E-2018147IPR003441NAC domain
SuperFamilySSF1019416.41E-19166326IPR003441NAC domain
PROSITE profilePS5100515.455174327IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAADDYLQIR EELMGAGDEL ILLRYLKPMI ENGASWPQHF SEDADVFNKN PSNTFNPEDT  60
VFVIVNPRTE ACGKTDGCDY GSWRIMARDK LIKNEETGEL LGFKKILKFC VKKTTRAREY  120
KRSWVMEEYR LPSKWNPNQD HVICKIRLLF QTEIGFLLSK HFSYSSGPLP ATQSLPAYGY  180
GLPQEEEGRY YLQNLIGHEN EWPSYVTNDV YRMHPSALVD PRRDQMFAES GLCIFANRTE  240
ASGYTDGGCD RGCWRIVVGD KPISSITVMD ETFGYRRVFK FCEEDDKDKH FYTDPNGGVV  300
LLNWIMEEYR LAEEDMKNKV LCVIKLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01306.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467294.10.0PREDICTED: uncharacterized protein LOC108838937
TrEMBLA0A0D3EBI90.0A0A0D3EBI9_BRAOL; Uncharacterized protein
STRINGBo9g122180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-121NAC domain containing protein 23