PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_01185.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 45016.2 Da PI: 6.2018 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.3 | 2.5e-35 | 5 | 142 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya..tgkrknratksgy 82 p+G+rFhPtdee+v +y ++k +++ +++ev+++vdiy+++P++L +++k++++ wyfF +++++++ + +r++r tksg Rsa1.0_01185.1_g00011.1 5 PVGYRFHPTDEEIVGDYVRPKNLESNtSHVDEVMNTVDIYEFDPSELAgkSRIKSTDEVWYFFGCKKNQQQskKRERQSRRTKSGS 90 79*****************99665553788889**************85348889999*****888777762245688899***** PP NAM 83 Wkatgkdkevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyr 127 Wk+tg + ++++k ++e++g k+++vf + + ++ +k+dWvmhey Rsa1.0_01185.1_g00011.1 91 WKKTGDTMNIFRKrgDREKIGEKRVFVFSskilgESKPKSKSKSDWVMHEYV 142 ************9887889**********8777656777888*********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-36 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.087 | 4 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-20 | 5 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 399 aa Download sequence Send to blast |
MVDPPVGYRF HPTDEEIVGD YVRPKNLESN TSHVDEVMNT VDIYEFDPSE LAGKSRIKST 60 DEVWYFFGCK KNQQQSKKRE RQSRRTKSGS WKKTGDTMNI FRKRGDREKI GEKRVFVFSS 120 KILGESKPKS KSKSDWVMHE YVATFLSPTD QTTTMMMKYT VCKVMFKGDP RDLPSSSSSS 180 AGENEHHLSL ITHVNSSNSG GLSTETENPR HFTGFLHLEE ETQLEDAIRR AIDNVSTDDL 240 NFLLNNNDNA EKEQGNTMFM QEDRNDYRPK MSLTGVFIDR SDDDSDFDSI SSTTTTTGSI 300 KTSSTCVSFG FSNHPIHLPG SSTIESGSVT QEVSEALGTN TVTSEKKMNP CDDDAQVSEI 360 VGDQMGQEMV IKNKRAGFIY RMIQKFTKKI KLYSCVTGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-14 | 5 | 164 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-14 | 5 | 164 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-14 | 5 | 164 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-14 | 5 | 164 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swm_B | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swm_C | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swm_D | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swp_A | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swp_B | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swp_C | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
3swp_D | 8e-14 | 5 | 164 | 21 | 165 | NAC domain-containing protein 19 |
4dul_A | 7e-14 | 5 | 164 | 18 | 162 | NAC domain-containing protein 19 |
4dul_B | 7e-14 | 5 | 164 | 18 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_01185.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470768.1 | 0.0 | PREDICTED: NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 1e-105 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWX3 | 0.0 | M4EWX3_BRARP; Uncharacterized protein | ||||
STRING | Bra033308.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-80 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|