PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01185.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 318aa    MW: 35767.9 Da    PI: 6.0903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01185.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.61.3e-15956248
                      NAM  2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp 48
                             p+GfrF+Ptdee+v++yL+ k ++g++ +++evi++vdi++++Pw+L 
  Rsa1.0_01185.1_g00010.1  9 PVGFRFRPTDEEIVDHYLRSKnMDGNTSHVDEVISTVDICSFDPWELA 56
                             89*****************99355556888889**************7 PP
2NAM58.42.4e-1811719353127
                      NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kg.rapkgektdWvmheyr 127
                              +++  wyf+ ++d+   +g+r++r+tksg+Wk+tg++ ++++k  ++e++g k++Lvf+   k    pk  k++Wvmhey 
  Rsa1.0_01185.1_g00010.1 117 ETDYVWYFYGRKDN---RGERQSRKTKSGFWKKTGNTMDIFRKrgNHEQIGEKRVLVFHysgKIlGGPK-PKSEWVMHEYV 193
                              23447899988877...589**********************9888889*********96431112333.59********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-14757IPR003441NAC domain
PROSITE profilePS5100533.6948215IPR003441NAC domain
PfamPF023651.2E-229193IPR003441NAC domain
SuperFamilySSF1019412.35E-19116215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKTVDPHPV GFRFRPTDEE IVDHYLRSKN MDGNTSHVDE VISTVDICSF DPWELACAGF  60
EHTSHGEAPV TPDLKTACVR RSGEPCVSIV FSPTLLTPSV RSACFTRRSH SITTRKETDY  120
VWYFYGRKDN RGERQSRKTK SGFWKKTGNT MDIFRKRGNH EQIGEKRVLV FHYSGKILGG  180
PKPKSEWVMH EYVATFLSPT PTAMVTYTVC KVMFKGDTSD LPSTSASAGG CEVEHSRTLI  240
TPMNNLGGGL SSEAEESSSE LQDPRQFSGF LHLEEETQIE DAIRRAINNL SPHDLNSLLN  300
NDYDDDEQGK TQEVSSFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01185.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482381.10.0PREDICTED: NAC domain-containing protein 5-like isoform X1
TrEMBLA0A3N6RME71e-124A0A3N6RME7_BRACR; Uncharacterized protein
STRINGBra033303.1-P5e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.12e-63NAC domain containing protein 5