PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01185.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 380aa    MW: 43036.3 Da    PI: 6.269
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01185.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1141.6e-3561413127
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              +GfrF+Ptdee+v +y ++k  +++  +++ev+++vdiy+++Pw+Lp k ++k++++ wyfF +++++++  ++++r t+sg+W++
  Rsa1.0_01185.1_g00008.1   6 VGFRFRPTDEEIVGHYVRPKNLESNtSHVDEVMNTVDIYSFDPWELPcKsRIKSTDEVWYFFGCKKNQQHMHNKQSRRTTSGFWSK 91 
                              7*****************99665553788889**************96358888999*****9999999999999999999***** PP

                      NAM  86 tgkdkevlsk....kgelvglkktLvfy....kgrapkgektdWvmheyr 127
                              tg ++++++k    ++e++g k+++vf         p+ +k+dWvmhey 
  Rsa1.0_01185.1_g00008.1  92 TGVTTAITRKrgggDREKIGEKRVFVFRysskVLGGPSKSKSDWVMHEYI 141
                              *********999888889*********7554312567779*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.5014166IPR003441NAC domain
SuperFamilySSF1019412.35E-365166IPR003441NAC domain
PfamPF023657.0E-216140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVDPVVGFRF RPTDEEIVGH YVRPKNLESN TSHVDEVMNT VDIYSFDPWE LPCKSRIKST  60
DEVWYFFGCK KNQQHMHNKQ SRRTTSGFWS KTGVTTAITR KRGGGDREKI GEKRVFVFRY  120
SSKVLGGPSK SKSDWVMHEY IATFSSPDSP PNQTMMTYTV CKVIFKGDPR DLPSSSSSSA  180
AGEIEHDLSL IPLVNNNSGG LSTETEVVGY FTTLLLCLFP FFSGVVSFEL QNPRQISGFL  240
NLEEETQFED EMSRVFNTLP TDDWNSLFNN DEEEQGNIMF MQEDRNDYKP KKSLTGDSDS  300
DSDSISTTCS IKSSSTCVSF GEQGSGNQYC YISEKKMSPC DDNAKEVRSE VIKSKRAGLI  360
YRMILRFTKK IKLCSCVSRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-17714018138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01185.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470744.11e-174PREDICTED: NAC domain-containing protein 5-like
SwissprotO819143e-98NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A3P6CVK11e-169A0A3P6CVK1_BRACM; Uncharacterized protein
STRINGBra033303.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-86NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]