PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01185.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 382aa    MW: 43379.2 Da    PI: 5.3593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01185.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.31.2e-3551303127
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              +GfrF Ptdee+v++y++ k  g +   +++e+i++vdi++++Pw+Lp k + +++++ wy+F ++d+   +g+r++r+tksg+Wk
  Rsa1.0_01185.1_g00007.1   5 VGFRFIPTDEEIVDHYIRLKNLGGStnSHVDEAISTVDICSFDPWELPcKsRRESRDQVWYYFGRKDN---RGERQSRKTKSGFWK 87 
                              7*****************998888756666778***************533555577899***99887...589************ PP

                      NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              +tg + ++++k  ++e++g k++Lv++   ++  +k+dWvmhey 
  Rsa1.0_01185.1_g00007.1  88 KTGVTMDIFRKrgDREKIGEKRVLVYHLSGSK--SKSDWVMHEYI 130
                              **********9887889**********54443..59********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.6363152IPR003441NAC domain
SuperFamilySSF1019413.27E-374152IPR003441NAC domain
PfamPF023658.6E-215129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MENRVGFRFI PTDEEIVDHY IRLKNLGGST NSHVDEAIST VDICSFDPWE LPCKSRRESR  60
DQVWYYFGRK DNRGERQSRK TKSGFWKKTG VTMDIFRKRG DREKIGEKRV LVYHLSGSKS  120
KSDWVMHEYI ATFLPPTTDQ MTSYTVCKVM FKGDPSDLPS TSSSSGGEVE HMNNSGGSEV  180
GLENPRHFTG LLDAEKETQI GDAIRRAIFD NVSTHDLNAL LNFQNDDDEL VNRLFMQEDR  240
NDYRPKMSLT GFISDDDDDD DDSDSDLISA TTTTGSIQTS SSTYDSFGSS NRRIDQITDL  300
KNSPSSTTKL MSPTQVVSKP LETSLDTSKE TKNHYEDVQG TEMAKCEMDE KVINNKRAGF  360
FYRKIQTCIK KILLCSSIPL RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-18612918138Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAPTransfer from AT1G02250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01185.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492222.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-108NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A397XN331e-172A0A397XN33_BRACM; Uncharacterized protein
STRINGBra033298.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-93NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]