PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01177.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22266.8 Da PI: 8.3983 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.2 | 2.4e-37 | 16 | 116 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCaaCk++r+kC+++C+la+yf++e++++f n+hklFG+sn++k++k ++e +r+ am+ l+++A+arardPv G+++++l+l++q Rsa1.0_01177.1_g00001.1 16 ACAACKYQRKKCTENCILARYFAQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDVAMNNLIFHANARARDPVLGVFKIMLDLKHQ 101 7************************************************************************************* PP DUF260 87 leqlkaelallkeel 101 +++++ael+ l+++l Rsa1.0_01177.1_g00001.1 102 IACAQAELNFLHQKL 116 **********99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 17 | No hit | No description |
PROSITE profile | PS50891 | 24.141 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-34 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSLSKFHGGS SSSATACAAC KYQRKKCTEN CILARYFAQE KQNQFLNAHK LFGVSNITKF 60 IKGVEECQRD VAMNNLIFHA NARARDPVLG VFKIMLDLKH QIACAQAELN FLHQKLATCQ 120 TLALQQQLAC YSYGDLLEQG DQYLNIDGHV HQEIMQKQSP LNYEMFMEMP IKLEKEKISI 180 PGHKNAVNQI AMPSQVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-23 | 10 | 116 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-23 | 10 | 116 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01177.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469529.1 | 1e-146 | PREDICTED: LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 2e-67 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A291LR36 | 3e-95 | A0A291LR36_BRARR; Transcription factor LBD7 | ||||
TrEMBL | M4CV17 | 3e-95 | M4CV17_BRARP; Uncharacterized protein | ||||
STRING | Bra008062.1-P | 4e-96 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-53 | LOB domain-containing protein 7 |