PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01104.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 277aa    MW: 31871.7 Da    PI: 10.3869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01104.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-162761997
                             -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             p +f+ ++ +kk  + +++++ ++g sWev +  +k+++  y+ ++GW++Fv++n L e++fv+F+++g ++f  +v ++
  Rsa1.0_01104.1_g00013.1  2 PYNFM-KNVSKKDFHYKMVIRAQWGSSWEVDI--SKNPSFyYMEKSGWNQFVSDNALGENEFVTFTHKGLMCF--NVNIY 76
                             89999.5656778999****************..9**999566669********************9988999..66665 PP
2B338.42.3e-12190268990
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               ++ ++ l +pk f e++  +  esk  ++ +++g  sWev +    ++ r+++++GW++ +++  L +gD ++F+l++ +ef
  Rsa1.0_01104.1_g00013.1 190 TNSYLKFLAIPKMFEEAYIPD--ESKVYMIHNSEGkGSWEVHC--LVRQTRTIFSSGWSRLAREYPLSVGDRCTFHLVKPTEF 268
                              334445699*****9999433..45555556655559******..8888899************************9986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.10E-11176No hitNo description
PROSITE profilePS5086312.661179IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-15184IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-8279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-14280IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-14275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15179271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17180271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.307182276IPR003340B3 DNA binding domain
CDDcd100175.03E-11183271No hitNo description
SMARTSM010192.1E-12185276IPR003340B3 DNA binding domain
PfamPF023622.6E-10187270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPYNFMKNVS KKDFHYKMVI RAQWGSSWEV DISKNPSFYY MEKSGWNQFV SDNALGENEF  60
VTFTHKGLMC FNVNIYGKNG KEIVTPRKPQ TTTPFSGGIK KEEGESSYRD VKKEDESTGG  120
VELEEEKKKA AESKTSKKKS KSKKVEKGES SRGAVPKKKK AEKEKPSKKK KKIKRKKVKN  180
GVPEFKITIT NSYLKFLAIP KMFEEAYIPD ESKVYMIHNS EGKGSWEVHC LVRQTRTIFS  240
SGWSRLAREY PLSVGDRCTF HLVKPTEFVL TSKKARE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157176KKKAEKEKPSKKKKKIKRKK
2167176KKKKKIKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01104.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490034.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP62e-98Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3N6Q5591e-140A0A3N6Q559_BRACR; Uncharacterized protein
STRINGBra001648.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.17e-92B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]