PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G17010.1 | ||||||||
Common Name | K14A17.8, REM22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 302aa MW: 35287 Da PI: 10.3848 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.3e-19 | 21 | 114 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk++ ++d ++ ++ lp +f+++ + +k s +++++ ++g++W+v++ +k++ y+ t+GW Fv++n L +++f++F++ g++ f +v ++ AT3G17010.1 21 FFKIFQRADLSSDCMRALPYSFISKVS-EKDFSYKMVIRAQWGKTWDVEV--SKNPTYyYIETRGWDLFVSDNALGQNEFITFTHRGNMVF--HVNIY 113 99*********************9995.456999****************..99999956667*********************9999999..88887 PP - CS B3 98 r 98 + AT3G17010.1 114 E 114 6 PP | |||||||
2 | B3 | 36.7 | 7.4e-12 | 211 | 286 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l +pk+f+++h +++sk t+++++g sW+v + + r+++++G ++ +++ L +gD ++Fkl++ fe+v+ AT3G17010.1 211 LKFLAIPKHFVDDHI--PNKSKIFTIRHPNGGSWKVLC--LVREIRTIFSGGYSKLAREFPLMVGDKCTFKLIK--PFEFVL 286 45699******9995..457889***************..8888899************************987..555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-20 | 16 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-17 | 17 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.33E-18 | 20 | 113 | No hit | No description |
PROSITE profile | PS50863 | 13.352 | 21 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-17 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-23 | 21 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.73E-18 | 198 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.25 | 199 | 292 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.50E-12 | 200 | 280 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 200 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.8E-17 | 202 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-10 | 209 | 285 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0020001 | anatomy | ovary placenta | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGKSSNIVFD RIKEERQMLS FFKIFQRADL SSDCMRALPY SFISKVSEKD FSYKMVIRAQ 60 WGKTWDVEVS KNPTYYYIET RGWDLFVSDN ALGQNEFITF THRGNMVFHV NIYEQNGLEM 120 RKPRKFQTMG PSSGIKKEEG ENSLIDVKKE EESDESPGRA EFLVRKKKTE DSKSSKKKMT 180 RNKVKKKSKS KSKQVLDGVP EFKITIRKSY LKFLAIPKHF VDDHIPNKSK IFTIRHPNGG 240 SWKVLCLVRE IRTIFSGGYS KLAREFPLMV GDKCTFKLIK PFEFVLLTSK KNREKMDQCM 300 ID |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.38804 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30684330 | 0.0 | ||||
Genevisible | 257930_at | 0.0 | ||||
Expression Atlas | AT3G17010 | - | ||||
AtGenExpress | AT3G17010 | - | ||||
ATTED-II | AT3G17010 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G17010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G17010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493618 | 0.0 | AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188326.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9LSP6 | 0.0 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A178VKY2 | 0.0 | A0A178VKY2_ARATH; REM22 | ||||
STRING | AT3G17010.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Link Out ? help Back to Top | |
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Phytozome | AT3G17010.1 |
Entrez Gene | 820957 |
iHOP | AT3G17010 |
wikigenes | AT3G17010 |
Publications ? help Back to Top | |||
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