PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01083.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 524aa    MW: 57438.6 Da    PI: 8.769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01083.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07202222526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+f+ + G Ck Gd+C+F H+
  Rsa1.0_01083.1_g00005.1 202 VCKFWKA-GNCKKGDQCSFLHS 222
                              5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-6197222IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6197223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6198222IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4202222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751202224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.5E-9223265IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-4228267IPR001680WD40 repeat
SuperFamilySSF509785.13E-43228520IPR017986WD40-repeat-containing domain
PROSITE profilePS5029420.118235440IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984235276IPR001680WD40 repeat
PfamPF117151.4E-5250283No hitNo description
PRINTSPR003206.1E-8254268IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780254268IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.140.10.108.2E-7266338IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM00320270308345IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.3E-27339520IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.5E-4353391IPR001680WD40 repeat
PfamPF004008.1E-5357391IPR001680WD40 repeat
PROSITE profilePS5008210.442375400IPR001680WD40 repeat
PROSITE patternPS006780378392IPR019775WD40 repeat, conserved site
PRINTSPR003206.1E-8378392IPR020472G-protein beta WD-40 repeat
SMARTSM003203.2E-5394431IPR001680WD40 repeat
PfamPF004000.0033396430IPR001680WD40 repeat
PROSITE profilePS500829.138401430IPR001680WD40 repeat
PRINTSPR003206.1E-8418432IPR020472G-protein beta WD-40 repeat
SMARTSM003201.8481518IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MISSCFQFRC PLPLDLRRLF ALITQEARHE LGSLQRIGGF LIDSLGTPWE ACYSSEVFCG  60
SSWMKQAAIV SLCGYSLLKL VFFSMCFYSM SYYKAPRRNF GVERQQGFVA DVVPRRPYDN  120
RMKNGPNKWS RNLVWTASDA NKPMKNDTTY VSTKPHVSGA RSSSVSNLLR KDAAHGQRSS  180
SVSDTRGWGP NDRGIPKSKE CVCKFWKAGN CKKGDQCSFL HSWTSLPGMV MVAALEGHKK  240
DLKGIALPQG SDKLFSASSD GTLRIWDCHT GQCVHTINLQ AEAGSLISEG PWVFLGLPNA  300
VKAFNVQTSK DLHLNGVVAG RVSAIIVGNG MLFAGTSSGS ISVWKATDTE SDPFTYLTSL  360
EGHHTGEVTC FIVGGQQLYS GSVDRTIKVW DLNTLECTMT LRQHTDTVTS LLCWDRYLIS  420
SSLDGTIKVW ACSEHSILKV TNTRRQGQSV HTLSGMTDAE GKPIVFCSYQ NGTVSICDLP  480
SFEERGKMFS TNTVGAITVG PEGLLFTGDK SGKLRVWSLA GTKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-1723552211325Tako8
6g6n_A6e-1723552211325Tako8
6g6n_B6e-1723552211325Tako8
6g6n_C6e-1723552211325Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01083.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485361.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C0F60.0A0A3P6C0F6_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein