PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01079.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 268aa    MW: 29873.4 Da    PI: 5.8135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01079.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-19651147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEde+l   v+++G+++W++I++ ++ gR++k+c++rw + 
  Rsa1.0_01079.1_g00003.1  6 KGPWSQEEDEQLRLMVEKHGPRNWSAISKSIP-GRSGKSCRLRWCNQ 51
                             79******************************.***********985 PP
2Myb_DNA-binding53.46.1e-1760102347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++++eEde +v a +++G++ W+tIar ++ gRt++ +k++w++ 
  Rsa1.0_01079.1_g00003.1  60 PFSPEEDETIVSARAKFGNK-WATIARLLN-GRTDNAVKNHWNST 102
                              89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.76156IPR017930Myb domain
SuperFamilySSF466892.84E-31399IPR009057Homeodomain-like
SMARTSM007172.6E-17554IPR001005SANT/Myb domain
PfamPF002496.8E-19651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-25759IPR009057Homeodomain-like
CDDcd001675.74E-16850No hitNo description
SMARTSM007173.4E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129418.55558107IPR017930Myb domain
CDDcd001671.19E-1060103No hitNo description
PfamPF002493.7E-1460102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2260107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MADRVKGPWS QEEDEQLRLM VEKHGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP  60
FSPEEDETIV SARAKFGNKW ATIARLLNGR TDNAVKNHWN STLKRKWLDG NLTTEEEGRD  120
PAKKRRSMSS ESVVPPPVVD TGLYMSPESP NSDSSTVPAQ VFKPMPEVSP EEEEDPATAL  180
SLSLSLPGGD VSQESSQSSL LVPRFESQMR INVEERGEAR RGEFMRVVHE MVKAEVRSYM  240
AEMQRNNGGG FVVGGGGFYD SGITPKVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-3851063104C-Myb DNA-Binding Domain
1msf_C8e-3851063104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103125KRKWLDGNLTTEEEGRDPAKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01079.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667431e-146KC966743.1 Brassica napus MYB transcription factor 77 (MYB77.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433458.10.0PREDICTED: transcription factor MYB44
SwissprotQ9SN121e-118MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A078H1F71e-148A0A078H1F7_BRANA; BnaAnng03830D protein
STRINGBo8g079430.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135981527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-101myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]