PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01063.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 450aa    MW: 48826.2 Da    PI: 6.4153
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01063.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17144193155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Rsa1.0_01063.1_g00001.1 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 193
                              78*******************......55************************997 PP
2AP239.81.1e-12236282151
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  Rsa1.0_01063.1_g00001.1 236 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 282
                              89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9144193IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15144201IPR016177DNA-binding domain
PROSITE profilePS5103217.82145201IPR001471AP2/ERF domain
SMARTSM003801.2E-32145207IPR001471AP2/ERF domain
CDDcd000186.68E-11145200No hitNo description
Gene3DG3DSA:3.30.730.107.7E-17145201IPR001471AP2/ERF domain
PfamPF008472.5E-8236282IPR001471AP2/ERF domain
CDDcd000183.74E-23236296No hitNo description
SuperFamilySSF541716.21E-16236295IPR016177DNA-binding domain
PROSITE profilePS5103215.277237294IPR001471AP2/ERF domain
SMARTSM003802.6E-29237300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15237295IPR001471AP2/ERF domain
PRINTSPR003671.2E-5238249IPR001471AP2/ERF domain
PRINTSPR003671.2E-5276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INAEADEDSC STRDFTLSFD  60
ILKVGSSGDG GGGGGGGGGD ESTAVTKEFF PVAGDCGHLR GSSSRSWIDL SFDGSSQGET  120
NLVAPAPAPA PVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA  180
ARAYDRAAIK FRGVDADINF TLGDYEEDMK QVQNLSKEEF VHILRRQSTG FSRGSSKYRG  240
VTLHKCGRWE ARMGQFLGKK YVYLGLFDSE VEAARAYDKA AISSNGREAV TNFELSSYQN  300
EINSETNNQG GHDNKLDLSL GMSLSPGNAS KQNGRLFHYP SNTYETQRGI GNEFMGKPVN  360
APLPYGSYWN GYNNPVEGRA TEKRSEAEGG GMMSNWGWQG PGQTSAMRPQ PPGTQPQLFS  420
VAAASSGFSN FRQQSPNDSA SSLGYFYPQP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01063.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6183171e-141KC618317.1 Cardamine flexuosa TOE1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631232.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3N6PS240.0A0A3N6PS24_BRACR; Uncharacterized protein
STRINGBo4g070350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7