PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01029.1_g00019.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 259aa MW: 29693.9 Da PI: 9.214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01029.1_g00019.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.5e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Rsa1.0_01029.1_g00019.1 91 FECHYCFRKFPTSQALGGHQNAH 113 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.07E-5	87	119	No hit	No description
PROSITE profile	PS50157	10.949	91	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEETNGRRET HNFMNVNVES FSQLPFIHRT RTPPKDKTSM IRLFGQELVR DNPQQEAFSP 60 DPCETTTTKI NHEKNVKEDN KDKDNISNRR FECHYCFRKF PTSQALGGHQ NAHKRERQHA 120 KRGSMTPYLD HHHYYQPEPH HVYGFLNNYH HRHYPSWTTE ARFYGGGGGG GGLQQMPSYY 180 SGTLLPPSSS SSAPPTINGS PLGFWRVPPS TSTNAIHGVY SASPALAFRA HDQESREPSW 240 PYKLMKPNVK DHLSLDLHL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:17507408, ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01029.1_g00019.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. {ECO:0000269\|PubMed:17507408}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475049.1	1e-176	PREDICTED: zinc finger protein 8-like
Swissprot	P93751	1e-112	ZFP8_ARATH; Zinc finger protein 8
TrEMBL	M4C7R7	1e-138	M4C7R7_BRARP; Uncharacterized protein
STRING	Bra000245.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2495	19	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	3e-98	zinc finger protein 8

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]