PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_01002.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 25060.2 Da PI: 5.1021 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7.1e-15 | 33 | 120 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 k+ + k++++ +p +f+ + g ++ + t+t++++ g + ++++ ++++++++l+kGW+eF++a+ ++eg f+ F ++g+s Rsa1.0_01002.1_g00008.1 33 KII--LPTIKEKMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIRI--KRTGNEVWLEKGWSEFAEAHSINEGHFLYFCYEGNS 111 555..66788999********.565..44777****************..************************************ PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v++f+ Rsa1.0_01002.1_g00008.1 112 SF--RVMIFDV 120 *9..9999985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-20 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 26 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 29 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.68E-16 | 29 | 119 | No hit | No description |
SMART | SM01019 | 5.6E-14 | 31 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 34 | 119 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MNTTRRASAR ITSAASQRRQ KTEPEPAVKK FIKIILPTIK EKMMKIPARF VRLGPKLTDT 60 VTIQTPVGFK RSIRIKRTGN EVWLEKGWSE FAEAHSINEG HFLYFCYEGN SSFRVMIFDV 120 SASEIDYPMD KVHVIESDDD EVMEAMDTDD EEEGFTRVDS SDNDSSDAEA IDLEKLLKKM 180 PRVSVKSETI TIGNINVEET NSIDETQEDK RALRSSKRSS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_01002.1_g00008.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449383.1 | 1e-127 | PREDICTED: B3 domain-containing protein At1g49475 isoform X1 | ||||
Swissprot | Q9XIB4 | 7e-81 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A3P6FM04 | 1e-118 | A0A3P6FM04_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g011590.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49475.1 | 3e-69 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|