PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00970.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 311aa    MW: 34495.8 Da    PI: 6.6341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00970.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33164221259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  Rsa1.0_00970.1_g00001.1 164 EDGYRWRKYGQKAVKNSIYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHP 221
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381308.7E-1011311IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.809.4E-35148223IPR003657WRKY domain
SuperFamilySSF1182902.75E-29155223IPR003657WRKY domain
PROSITE profilePS5081131.456158223IPR003657WRKY domain
SMARTSM007749.0E-39163222IPR003657WRKY domain
PfamPF031061.2E-25164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSNESKDLYN YQYPPSFSLY ELMTLPTSTP SYGNNGYGPP SYSLADCLQS SPGAYDSLLP  60
KTSAPSPSSS EVFNSYIDQE SKREVSIDVI GETPTRVSAS SSASEADHPG EDSGKGQKKR  120
ELVGDGGEEN QSSKKVGKSK KNEEKKQREP RVSFMTKSEV DHLEDGYRWR KYGQKAVKNS  180
IYPRSYYRCT TQKCNVKKRV ERSFQDPTVV ITTYEGQHNH PLPTNLRGSS AAAAMYSADF  240
ITPGSFTHDM FRSSAYTSGG SAATAFDYGS YEQSGYGSVN ANPSTHQEYH QGGEYELLKE  300
IFPSIFFKQE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28154223877Probable WRKY transcription factor 4
2lex_A3e-28154223877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00970.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468553.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ21e-167WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D3DET20.0A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBLA0A3P6ER930.0A0A3P6ER93_BRAOL; WRKY transcription factor
STRINGBo7g105800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-148WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]