PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00964.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 433aa    MW: 48148.4 Da    PI: 6.1973
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00964.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.5e-5091381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ +di+k+ePwdLp  + vk++++ew fF++ d+ky++g r nrat +gyWk
  Rsa1.0_00964.1_g00011.1   9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAIDICKMEPWDLPdlSVVKTTDSEWLFFCPLDRKYPSGGRMNRATVAGYWK 93 
                              79*************************999.99**************96448888999**************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd+ v+s  +++ +g+k+tLvfykgrapkg++t W+mheyr+
  Rsa1.0_00964.1_g00011.1  94 ATGKDRMVKSGnSKKIIGVKRTLVFYKGRAPKGTRTCWIMHEYRA 138
                              *********98556669**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-575161IPR003441NAC domain
PROSITE profilePS5100555.579161IPR003441NAC domain
PfamPF023653.0E-2510137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEVLSLDSLP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAIDICKME PWDLPDLSVV  60
KTTDSEWLFF CPLDRKYPSG GRMNRATVAG YWKATGKDRM VKSGNSKKII GVKRTLVFYK  120
GRAPKGTRTC WIMHEYRATE KDLDGTNPGQ NPFVICKLFK KQDVVLPEDA VKSFSGECQS  180
EISAPEVTTS DQLDNIDWTS YLELETSDYD IFSPLQSELG SSFNGFQSGV TELFSNQNGA  240
HVQTQFASNE TDQSMFELLD SVLEFPYEFP EQKHVVVQPT PEQITYDPRS LVNTSSNKIS  300
SDASETGIKI RARRAQAPGG GAEQFAMQGV PETGIKIKAR RAQASGGGAE QFAMQGSAAR  360
RLRLQINHNS IEQEVKDTDE ETITKGCGSF MRWKSSIFEK VAAMGGSYRG LFKAGVVAVV  420
FAISVCSLTG KFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44416212166NO APICAL MERISTEM PROTEIN
1ut4_B2e-44416212166NO APICAL MERISTEM PROTEIN
1ut7_A2e-44416212166NO APICAL MERISTEM PROTEIN
1ut7_B2e-44416212166NO APICAL MERISTEM PROTEIN
4dul_A2e-44416212166NAC domain-containing protein 19
4dul_B2e-44416212166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00964.1_g00011.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204411e-159KJ420441.1 Brassica napus NAC transcription factor 91-2 (NAC91-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484381.10.0PREDICTED: NAC domain-containing protein 91-like isoform X1
SwissprotQ9LKG81e-172NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A397ZB040.0A0A397ZB04_BRACM; Uncharacterized protein
STRINGBo7g096710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-161TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]