PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00959.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24054.3 Da PI: 9.5311 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.5 | 3.8e-34 | 15 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 lp G+rFhPtd+el+ +yL +k+ +++l+ ++i+ +d+++++P ++p ++ee++ yfF+k++++ ++ +r + + +gyWk Rsa1.0_00959.1_g00004.1 15 LPIGYRFHPTDQELILHYLLPKAFASPLPS-SIIPVFDVFSTHPLTFPG--DQEENKRYFFCKKRSEVSSnAHRIKISSGDGYWKP 97 699*************************99.88***************3..4577899****999888751556666899****** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 t k++e+++ g+ vg+++tL+fy +++++k +kt+W m ey l Rsa1.0_00959.1_g00004.1 98 TRKEREIIA-CGRRVGIRRTLAFYetNKSSSKCNKTRWSMTEYCL 141 *********.999***********4434667778*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-40 | 9 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.429 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-20 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEVEKRTMVN GGMKLPIGYR FHPTDQELIL HYLLPKAFAS PLPSSIIPVF DVFSTHPLTF 60 PGDQEENKRY FFCKKRSEVS SNAHRIKISS GDGYWKPTRK EREIIACGRR VGIRRTLAFY 120 ETNKSSSKCN KTRWSMTEYC LAGFASTKVS GDWAVYNVYE RKVSKGRRQR KSSGRFDEEE 180 LSCIDFTIGS DHETGPPPPS PPTSADESGS II |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-20 | 1 | 162 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00959.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966760 | 0.0 | KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445335.1 | 1e-158 | PREDICTED: NAC domain-containing protein 41 | ||||
TrEMBL | V4LG11 | 1e-126 | V4LG11_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399904.1 | 1e-127 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-114 | NAC domain containing protein 84 |