PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00951.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 535aa MW: 60203.2 Da PI: 4.3067 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 18 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +++yk+ePwdLp + k+k+++ ewyfFs d+ky++g+++nrat++gyWk Rsa1.0_00951.1_g00017.1 18 LAPGFRFHPTDEELVRYYLKRKICNKPFRF-DAISVTHVYKSEPWDLPsQsKLKSRDLEWYFFSVLDNKYSNGSKTNRATEKGYWK 102 579**************************9.99**************95247777888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd+e+ + ++ +vg+kktLv++kgrap+ge+++Wvmheyrl Rsa1.0_00951.1_g00017.1 103 TTGKDREIRNGSRVVVGMKKTLVYHKGRAPRGERSNWVMHEYRL 146 **********99999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-59 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.038 | 18 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009819 | Biological Process | drought recovery | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MGRGGGGSSS SSSETSSLAP GFRFHPTDEE LVRYYLKRKI CNKPFRFDAI SVTHVYKSEP 60 WDLPSQSKLK SRDLEWYFFS VLDNKYSNGS KTNRATEKGY WKTTGKDREI RNGSRVVVGM 120 KKTLVYHKGR APRGERSNWV MHEYRLVDDE IVKAGVQKDA YVVCKIFQKS GSGPKNGEQY 180 GAPFVEEEWE EEDGMTFVPN QDLEDQVYVD VNDNDIDQKL DVYDAIPIHL GFDHGESSNN 240 VETNYSDSTN YIEPGNYGYF EGPMEKHIIH DGSSLQNEEN GCGVQEESRA NLQSSDNIFD 300 ADASLYNDFP VESNYFTGEE FLDQNSSLLQ NDGLYLDAND LDNTQEDGFN FEDYLTFFDE 360 DDQNLTFDPS QLMGTEDNIP DQEELFQMAE TEAASGGKQV VEEASCSKQV HADATEFEPD 420 YKDTFIKKAS HMIGAIPSPT IFSSEILTKD GVVRLQAGQP SGSVHVSMIT ISDSNMDWSY 480 GKNGNLDLLL SFGLVQENVS GKSENHLTRV MLIFVCFWVL LLSVSFKVST LVSSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 17 | 175 | 19 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00343 | DAP | Transfer from AT3G10500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00951.1_g00017.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439552.1 | 0.0 | PREDICTED: NAC domain-containing protein 53 isoform X2 | ||||
Swissprot | Q949N0 | 0.0 | NAC53_ARATH; NAC domain-containing protein 53 | ||||
TrEMBL | A0A078HVH3 | 0.0 | A0A078HVH3_BRANA; BnaA01g31650D protein | ||||
TrEMBL | A0A3P5ZBD4 | 0.0 | A0A3P5ZBD4_BRACM; Uncharacterized protein | ||||
STRING | Bo1g143830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 0.0 | NAC domain containing protein 53 |
Publications ? help Back to Top | |||
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