PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00951.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 23026.8 Da PI: 6.681 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.9e-14 | 87 | 131 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ ++ G+g+W+ I+r++ ++ q+ s+ qky Rsa1.0_00951.1_g00009.1 87 PWTEEEHRLFLEGLEKCGKGNWRDISRKIVRTKNSAQVASHAQKY 131 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.582 | 1 | 55 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-4 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.41E-8 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00394 | 6 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 78 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.078 | 80 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-14 | 83 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-9 | 84 | 134 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-15 | 85 | 135 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 8.53E-9 | 87 | 132 | No hit | No description |
Pfam | PF00249 | 2.5E-11 | 87 | 131 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGPKQWTRDD DKLFERLLLE FPENTPYRFE IIAVHLEKPL EEVKHYYEAL VHDINLIESG 60 RCPTTNYPDG IPSETEHMEK EKTRGIPWTE EEHRLFLEGL EKCGKGNWRD ISRKIVRTKN 120 SAQVASHAQK YFLRQVAKKN AKKRSSIHDI TLIDHAANNV TAPQSDLDST MGQPPSDQQG 180 LQDHHLSNED FWIRKLNS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00344 | DAP | Transfer from AT3G10580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00951.1_g00009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438383.1 | 1e-148 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | M4EZ87 | 1e-108 | M4EZ87_BRARP; Uncharacterized protein | ||||
STRING | Bra034130.1-P | 1e-109 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 4e-56 | MYB_related family protein |