PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00945.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 290aa MW: 32467.3 Da PI: 7.5089 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.6e-36 | 21 | 111 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl k+++++ed++++++isw+e+g+sfvv+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv ++ weF+++ F+ Rsa1.0_00945.1_g00002.1 21 FLIKTFNLVEDHSIDDVISWNEDGSSFVVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFR 97 9*****************************************************************99.........********* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkk 101 +g+k+ll++i+r+k Rsa1.0_00945.1_g00002.1 98 RGEKRLLKEIQRRK 111 ************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.2E-37 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.9E-55 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-34 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-18 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-31 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-18 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-18 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MVSDNGDAMI VESQRSVPTP FLIKTFNLVE DHSIDDVISW NEDGSSFVVW NPTDFARDLL 60 PKHFKHNNFS SFVRQLNTYG FKKVVPDRWE FSNDFFRRGE KRLLKEIQRR KLTPQAAVAP 120 PSEAAAAGQR VLTAKTVVSP SSSAEDQAVS PSWNCQTGNG GGLSVELLEE NEKLRSQNIQ 180 LNRELAQMKS LCDNIFSLMS TYSGSPPDEN RSSPGASTSR ERMKAVEFFP GKTEAAEEEA 240 SHRLFGVSIG LKRTRSEGVQ VKAVVGERSG EKEETPWLRH CNRTNQRVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-22 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-22 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-22 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00945.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491254.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 1e-135 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A397YZ92 | 1e-176 | A0A397YZ92_BRACM; Uncharacterized protein | ||||
STRING | Bra010049.1-P | 1e-177 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-134 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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