PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00924.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 155aa MW: 17920.6 Da PI: 6.0815 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 64.7 | 1.7e-20 | 28 | 80 | 1 | 53 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53 qlk+fw +q++ ++dfk h+lPla+ikki+ka + v+mis+e+ ++++kace+ Rsa1.0_00924.1_g00002.1 28 QLKNFWYQQVQAVEDFKTHQLPLAQIKKIIKAGPSVHMISTETTIVFTKACEI 80 89**************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.82E-10 | 23 | 80 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.2E-13 | 40 | 80 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.2E-5 | 47 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MENNEISMPN HQPQTTTFNP VLQERNDQLK NFWYQQVQAV EDFKTHQLPL AQIKKIIKAG 60 PSVHMISTET TIVFTKACEI NRISQPQWLT LSPLTFLSTF LDVVPRVESL NANPANMFLP 120 HPENAMQYFY LPVMDGSGMY SPQLWPSPWP AFNLW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00924.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402087.1 | 4e-39 | nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | V4KZY0 | 9e-38 | V4KZY0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402087.1 | 2e-38 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50480.1 | 2e-28 | nuclear factor Y, subunit C6 |