PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00920.1_g00019.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 565aa    MW: 63841.4 Da    PI: 4.7157
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00920.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.96.9e-16204254354
                  G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              + +Wt + H +F+ a++ L G+++  Pk ile+m+   L+  +v+SHLQkY+
  Rsa1.0_00920.1_g00019.1 204 KNVWTRDRHMKFLAAISIL-GEKESRPKPILEIMNDSNLSQRQVASHLQKYK 254
                              678****************.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011017.86519131IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-520127IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.53E-920165IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.0E-920152No hitNo description
SuperFamilySSF466893.05E-12201259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-17202260IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-15203254IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAENMVNLTK NIIPESTGVI LLIDHDAISV SSLISMLKQI SHKDVMSVNG ASEAISVIGK  60
QKDIGLVIAN VELTDSNYFL TAMHNKEIPL ILIGTEINIK EASDLLTKRA CFCLKKPISE  120
NDIDNMLQHV VPNKRQEWEK INVAEKRENV VEESMRQIQA FRDHIRRQGS SQSSLLGRRP  180
LNKTFTSSEM YRNGRSIENV ERRKNVWTRD RHMKFLAAIS ILGEKESRPK PILEIMNDSN  240
LSQRQVASHL QKYKFQVERI SNTLTRNEWK STDKTFHYPS DYVYPFKASN LMKNIIENSF  300
ERSAAERKGK MPKFHLEETS GLHSHSLFGS SVGASSLDAF QKESAQICIN PNPSQPSSYV  360
LETNRNPLDM NQMGTVSLGE NHGFSQDTIL TKSNHLGLVS GETSHIETPL ETDINQMDWD  420
WIFAEADYAI LEDMTVSETN RTQVGLGPSE TSFAALDNVA PPENNTNEIE LVPYQEGNDI  480
PIEDLVSFDT DISEMDLDAW LENYDSFQRD VPLPGSFINH DLAFTPATSQ HQNIEATNPR  540
EVIEGGNHLD DDSDQNLDWI DDIFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00920.1_g00019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455644.10.0PREDICTED: putative two-component response regulator-like APRR6
TrEMBLA0A3P6GUB70.0A0A3P6GUB7_BRAOL; Uncharacterized protein
STRINGBo6g106630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.11e-103pseudo-response regulator 6